Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41740 1242 / 0 ATVLN2, VLN2 villin 2 (.1) AT3G57410 1206 / 0 ATVLN3, VLN3 villin 3 (.1) AT5G57320 748 / 0 VLN5 villin 5, villin, putative (.1) AT4G30160 739 / 0 ATVLN4, VLN4 villin 4 (.1.2) AT2G29890 551 / 0 ATVLN1, VLN1 villin 1, villin-like 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035450 [exp] 1739 / 0 AT2G41740 1402 / 0.0 villin 2 (.1) Lus10015333 [exp] 756 / 0 AT4G30160 1395 / 0.0 villin 4 (.1.2) Lus10005861 [exp] 579 / 0 AT2G29890 1049 / 0.0 villin 1, villin-like 1 (.1.2.3) Lus10025461 [exp] 531 / 2e-175 AT4G30160 959 / 0.0 villin 4 (.1.2) Lus10015332 [exp] 75 / 3e-16 AT4G30160 100 / 4e-26 villin 4 (.1.2) Lus10015334 [exp] 71 / 2e-14 AT4G30160 132 / 3e-37 villin 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G050200 [exp] 1371 / 0 AT2G41740 1340 / 0.0 villin 2 (.1) Potri.016G056200 [exp] 1235 / 0 AT2G41740 1248 / 0.0 villin 2 (.1) Potri.006G165300 [exp] 791 / 0 AT4G30160 1507 / 0.0 villin 4 (.1.2) Potri.018G089700 [exp] 745 / 0 AT4G30160 1464 / 0.0 villin 4 (.1.2) Potri.009G045000 [exp] 514 / 2e-167 AT2G29890 1101 / 0.0 villin 1, villin-like 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0092 [flax] [poplar] ADF PF00626 [flax] [poplar] Gelsolin Gelsolin repeat CL0092 [flax] [poplar] PF02209 [flax] [poplar] VHP Villin headpiece domain
Representative CDS sequence Show only first row Show all	>Lus10031066 pacid=23166726 polypeptide=Lus10031066 locus=Lus10031066.g ID=Lus10031066.BGIv1.0 annot-version=v1.0 ATGTCTAGCGCTGCAAAAGTTTTAGACCCTGCATTCCAAGGAGTGGGGCAGAAACCTGGGACTGAAATATGGCGGATTGAGAATTTTCAACCTACTGCAG TGCCAAAGTCCGAACATGGAAAATTCTACATGGGGGATAGTTGTTGTGTTAACTCACCTTTTCTCCTTCATTTTTTTCCTTTTTGGCGGGGTTGGGGGAT TGATGGGGATTGGGGGGCAAGCGCAATGTGCTTTACAACACAAACGAAAGGAGGATCGTACTTGTATGACATTCACTTCTGGATTGGGAAGGACACTAGT CAGGATGAAGCTGGAGCAGCGGCTATTAAAACTGTCGAACTTGATGCAGCTCTTGGAGGACGTGCTGTGCAGCACAGGGAACTTCAAGGGCATGAATCTG ACCAGTTCTTATCTTTTTTTAAACCTTGTATTATACCATTAGAAGGAGGTGTTGCATCTGGCTTCAAGCATGCTGAGGCAGAAGCGTTTGAGACACGGTT GTATGTCTGCAAAGGCAAACGGGTGGTTAGAATGAAACAGGTTCCATTTGCGAGGTCATCTCTGAATCATGATGATGTGTTTATCCTGGACACTGAGAAG AAGATATATCAGTTCAATGGTGCAAACTCCAATATCCAAGAAAGGGCCAAGTCTCTAGAAGTTGTACAGTTCTTGAAAGATAAGTATCATGAGGGAACGT GTGATGTTGCAATTGTTGATGATGGAAAGTTGGATACTGAATCAGACTCAGGGGAGTTCTGGGTCCTTTTTGGTGGTTTTGCACCGATTGGGAAGAAGGT CCTCACTGATGACGACATTGTCGCAGAGCCGACTCCTGCTAAATTATATAGCATTAATGGAGGTGAGGTGACTGCTGTTGAGGGCGAACTATCGAAAGGT ATGTTGGAAAATAACAAATGTTATCTTCTGGATCGTGGCAATGAGGTGTTTATTTGGGTTGGCCGTACAACCCAAGTGGACGAGAGGAAAGAAGTTGGCA AAGCAGCAGAGGATTTTATTGCCAGTGAGAACAGGCCAAAATCTGTTCGTATAACTCGAGTTATTCAAGGTTATGAGACCCATTCATTCAAGTCAAATTT TGGTTCTTGGCCTGCTGGGTCTGTAGCTCCGGGTGCTGAAGAGGGACGAGGAAAAGTAGCAGCTTTGCTGAAGCAACAAGGCATGGGTCTCAAAGGTGCA TCAAAAAGTGCTCCTGTAACCGAGGAGGTCCCTCCTTTGCTTGAAGGAGGCGGGAAACTGGAGGTCTGGTGTATCAATGGCAGTGCCAAAACTCCAGTGC CGAAGGAAGATATTGGTAAATTTTATGCTGGAGACTGCTATATTGTCCTATATACCTATCACTCTGGTGATAGAAAAGAAGACTACTATCTCTGCTGTTG GTTTGGGAAGCATAGCATTGAGGCGGATCAGCAGATGGCTACTCGTTTGGCTAACACAATGTCAAACTCACTGAAAGGCAGACCTGTTTTGGGTCGCATA TTCCAAGGCAAGGAGCCACCGCAGTTCATTGCTATTTTCCAGCCTATGTTAGTCCTCAAGGGTGGTTTGAGCTCTGGCTACAAAAAATACATAGAAGAGA AAGAACTGGCAGATGAAACGTACACTGCTGATTCGGTGGCCCTCTTGCGTGTATTTGGAACTGCTGCACACAACAATAAGGCAGAGCAAGTAGATGCGGC GGCAAAATCCTTGAATTCCACTGAGTGTTTTCTCCTGCAATCCGGCTCTTCAGTTTTCACGTGGCATGGGAATCAGAGTGCTTTTGAACAACAGCAGCTG GCAGCAAAAGTTGCTGAATTCCTGAAACCTGGAGCAACGCTGAAACATGCTAAAGAAGGAACTGAAAGCTCAGCTTTCTGGTTCCCTCTTGGAGGAAAAC AAAGTTACAATAGCAAAAAGGTTGAGGAAGTGTACAACTTTTGTCAAGATGACCTGTTGACAGAGGATATATTGATACTTGATACAAGAGCTGAAGTTTT CGTATGGGTCGGCCAATCTACAGACTCCAAAGAAAAGCAAAGTGCTTTCGATATCGGCCAGCAATATATAGCGATGGCTGCAGCTCTTGAGGGTTTGTCA GTGAATGTGCCATTGTATAAAGTTACTGAAGGAAATGAGCCATCATTCTTCACCACATACTTCTCATGGGATTCCACAAAAGCCACTGCTCAAGGAAACT CATTCCAGAAGAAGATGTCATTACTCTTTGGTATAGGACATCATGAGGATAAGTCCAATGGGAACCAAGGAGGAGCAACCCAGAGGGCTTCTGCTTTAGC TGCCTTGAATTCTGCATTTAACCCATCCTCTGGAAAGTCCTCTCCCCGAAGCCAGGAGAGGAACAGTAATCAAGGTGGTCCGACTCAAAGAGCGTCAGCT TTAGCTGCTTTGAACAATGCCTTTAATTCGTCGTCCCCTAATGCCAAAACTAGTCCAAGGCCATCATCAGCTGGAACCCAGAGGGCTGCAGCTGTAGCTG CACTTTCCCAAGTTCTTACTGCTGAGAAGAAGATAACACCTGAGGGCACCCCTTCTCAAAGCCCCAGTGCTGAAACTAAATCTTCTGCTGAAGGAAAGAC GGAAAATGAAGTGTCCGAAGCAGAAGGGTCAGAAGAAGCTGCTGCAGAACCAAAGGAAGCTGAAGACACTGGATCTGCAGGTGGCGATTCTGAACCAAAA TCAGAGTTCGAGCTTGCTGACAGCGACATCGGTCAGGTTATATACAGTTATGATCAGCTGAAGGCTCGCTCTGAGAATCCTGTGACTGGGATAGATTTCA AGCGGAGAGAGGCATACCTGGCACCAGAGGAATTCCAGACTATATTTGGGATGGAGAAAGAAGCATTCTACAAGCTGCCCAAGTGGAAGCAGGACATCCA GAAGAAGAAAGTTGATTTGTTTTAA
AA sequence Show only first row Show all	>Lus10031066 pacid=23166726 polypeptide=Lus10031066 locus=Lus10031066.g ID=Lus10031066.BGIv1.0 annot-version=v1.0 MSSAAKVLDPAFQGVGQKPGTEIWRIENFQPTAVPKSEHGKFYMGDSCCVNSPFLLHFFPFWRGWGIDGDWGASAMCFTTQTKGGSYLYDIHFWIGKDTS QDEAGAAAIKTVELDAALGGRAVQHRELQGHESDQFLSFFKPCIIPLEGGVASGFKHAEAEAFETRLYVCKGKRVVRMKQVPFARSSLNHDDVFILDTEK KIYQFNGANSNIQERAKSLEVVQFLKDKYHEGTCDVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVLTDDDIVAEPTPAKLYSINGGEVTAVEGELSKG MLENNKCYLLDRGNEVFIWVGRTTQVDERKEVGKAAEDFIASENRPKSVRITRVIQGYETHSFKSNFGSWPAGSVAPGAEEGRGKVAALLKQQGMGLKGA SKSAPVTEEVPPLLEGGGKLEVWCINGSAKTPVPKEDIGKFYAGDCYIVLYTYHSGDRKEDYYLCCWFGKHSIEADQQMATRLANTMSNSLKGRPVLGRI FQGKEPPQFIAIFQPMLVLKGGLSSGYKKYIEEKELADETYTADSVALLRVFGTAAHNNKAEQVDAAAKSLNSTECFLLQSGSSVFTWHGNQSAFEQQQL AAKVAEFLKPGATLKHAKEGTESSAFWFPLGGKQSYNSKKVEEVYNFCQDDLLTEDILILDTRAEVFVWVGQSTDSKEKQSAFDIGQQYIAMAAALEGLS VNVPLYKVTEGNEPSFFTTYFSWDSTKATAQGNSFQKKMSLLFGIGHHEDKSNGNQGGATQRASALAALNSAFNPSSGKSSPRSQERNSNQGGPTQRASA LAALNNAFNSSSPNAKTSPRPSSAGTQRAAAVAALSQVLTAEKKITPEGTPSQSPSAETKSSAEGKTENEVSEAEGSEEAAAEPKEAEDTGSAGGDSEPK SEFELADSDIGQVIYSYDQLKARSENPVTGIDFKRREAYLAPEEFQTIFGMEKEAFYKLPKWKQDIQKKKVDLF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41740		ATVLN2, VLN2	villin 2 (.1)		Lus10031066 [exp]	0	1
AT2G41740		ATVLN2, VLN2	villin 2 (.1)		Lus10035450 [exp]	1.0	0.9634
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Lus10013338 [exp]	1.4	0.8887
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10036501 [exp]	3.9	0.8169
AT3G01780		TPLATE	ARM repeat superfamily protein...		Lus10032067 [exp]	5.5	0.8466
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Lus10021570 [exp]	5.5	0.8575
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Lus10017160 [exp]	5.7	0.8512
AT3G51460		rhd4	ROOT HAIR DEFECTIVE4, Phosphoi...		Lus10016697 [exp]	7.1	0.8352
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10020940 [exp]	14.3	0.7818
AT1G71360			Galactose-binding protein (.1)		Lus10003532 [exp]	14.6	0.7367
AT5G40740			unknown protein		Lus10014617 [exp]	17.3	0.7797

Compare expression of checked genes

Lus10031066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.