Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41810 459 / 9e-162 Protein of unknown function, DUF642 (.1) AT2G41800 436 / 6e-153 Protein of unknown function, DUF642 (.1) AT3G08030 412 / 1e-143 Protein of unknown function, DUF642 (.1.2) AT4G32460 355 / 7e-121 Protein of unknown function, DUF642 (.1.2) AT5G11420 350 / 3e-119 Protein of unknown function, DUF642 (.1) AT5G25460 344 / 1e-116 Protein of unknown function, DUF642 (.1) AT1G80240 342 / 7e-116 Protein of unknown function, DUF642 (.1) AT2G34510 281 / 2e-91 Protein of unknown function, DUF642 (.1) AT1G29980 277 / 5e-90 Protein of unknown function, DUF642 (.1.2) AT5G14150 122 / 4e-31 Protein of unknown function, DUF642 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035451 [exp] 621 / 0 AT2G41810 476 / 1e-168 Protein of unknown function, DUF642 (.1) Lus10039602 [exp] 438 / 1e-153 AT3G08030 530 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10029501 [exp] 437 / 2e-153 AT3G08030 537 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10016394 [exp] 382 / 3e-131 AT3G08030 469 / 2e-166 Protein of unknown function, DUF642 (.1.2) Lus10029503 [exp] 371 / 5e-128 AT3G08030 465 / 4e-166 Protein of unknown function, DUF642 (.1.2) Lus10016393 [exp] 369 / 2e-126 AT3G08030 490 / 1e-174 Protein of unknown function, DUF642 (.1.2) Lus10029502 [exp] 369 / 4e-126 AT3G08030 475 / 1e-168 Protein of unknown function, DUF642 (.1.2) Lus10005474 [exp] 361 / 4e-123 AT5G11420 581 / 0.0 Protein of unknown function, DUF642 (.1) Lus10013112 [exp] 359 / 2e-122 AT5G11420 606 / 0.0 Protein of unknown function, DUF642 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G050300 [exp] 508 / 0 AT2G41810 530 / 0.0 Protein of unknown function, DUF642 (.1) Potri.016G056100 [exp] 504 / 7e-180 AT2G41810 520 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G050400 [exp] 494 / 6e-176 AT2G41810 521 / 0.0 Protein of unknown function, DUF642 (.1) Potri.001G263900 [exp] 430 / 1e-150 AT3G08030 515 / 0.0 Protein of unknown function, DUF642 (.1.2) Potri.009G058800 [exp] 426 / 4e-149 AT3G08030 498 / 9e-178 Protein of unknown function, DUF642 (.1.2) Potri.006G250100 [exp] 365 / 8e-125 AT5G11420 598 / 0.0 Protein of unknown function, DUF642 (.1) Potri.018G031100 [exp] 359 / 9e-122 AT5G11420 600 / 0.0 Protein of unknown function, DUF642 (.1) Potri.003G059800 [exp] 340 / 1e-114 AT5G25460 513 / 0.0 Protein of unknown function, DUF642 (.1) Potri.001G174400 [exp] 333 / 4e-112 AT5G25460 507 / 0.0 Protein of unknown function, DUF642 (.1) Potri.011G087500 [exp] 292 / 4e-96 AT1G29980 578 / 0.0 Protein of unknown function, DUF642 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF04862 [flax] [poplar] DUF642 Protein of unknown function (DUF642)
Representative CDS sequence Show only first row Show all	>Lus10031067 pacid=23166860 polypeptide=Lus10031067 locus=Lus10031067.g ID=Lus10031067.BGIv1.0 annot-version=v1.0 ATGGCTTTCCCCTTGCCTTTCCTCTGCCTCTTCTCACTACTCATCATCCTCTTCATCACCGCCGCATCCTCCGCTCCTCCTCCGCCTCTCGACGGACTAG TTCCGAATGGCGACTTCGAGCAACCGCCGCCGAAATCCAAGCTCAAGAAAACAGCCATCATAGGCAAGCACTCCCTCCCCAGCTGGCAAATCACGGGCCT CGTCGAGTACGTCTCGGCCGGCCCCCAGCCCGGCGGGTTCTACTTCGCCGTCCCTAGAGGTGTCCACGCCGTCAGGCTCGGAAACAGAGCCACCATTTCC CAAACCCTCGACCTCAACAAAGCCAGTAACAAAAGTACTGCTTCGTCGTCGTCGTCGGTCTACAGCTTGACATTCGGAGCAACCAAGACCTGCGCTCAGG ATGAGGTTCTGAGGGTGACGGTGGCGGATGGTGGTACTGGTGGTGTAGTTTACTCTGCCTCTGATCTGCCTCTGCAGACTCTGTACAGTAGTGACGGCGG CGACACTTATGCGGTGGCGTTTACAGTTGGTGGCCGTGTGGAGAGTGTTAGGGTTAGCTTTTATAACCCAGGTGTTCAGGAAGATCCTGCTTGTGGTCCT CTTTTGGATGCTGTGGCCATCAAGCATATCCCTCCTCTTTCCTACTCTCCAGGAAACCTAGTGAAGAACGGAGGATTCGAAACAGGGCCGCACGTGTTCA AGAACTTGTCAACGGGAGTCCTCCTCCCACCAAAAGCCATGGACAAAACCTCCCCGCTCCCCGGATGGATCGTCGAGTCCCTCAAACCGGTCAAGTACAT CGACAGTACCCACTTCTCCGTCCCGTCGGGACTCGCCGCCGTGGAGCTGGTCGCCGGGAGGGAAAGCGCCATCGCCCAGGTCATCAGAACAGTCCCTCGC AAGACCTACAAGCTGACCTTCTCCATCGGGGACGCCAAGAACGGATGCCACGGATCCATGATGGTGGAGGCATTTGCCGCCGACAAAACCGTCAAAGTCC CGTTTGTGTCTGTCGGGAAAGGCGGGTTCAAAGTTGCTAACTTGGTGTTTCAGGCTCAGTCGGAAAGGACTCGGGTCACTTTCTACAGTGGGTATTATCA TACCAAGCTGAATGACTATGGTCACCTTTGTGGGCCCGTCTTGGATGATGTCAAGGTGATCTTGGTGATGAGTTGA
AA sequence Show only first row Show all	>Lus10031067 pacid=23166860 polypeptide=Lus10031067 locus=Lus10031067.g ID=Lus10031067.BGIv1.0 annot-version=v1.0 MAFPLPFLCLFSLLIILFITAASSAPPPPLDGLVPNGDFEQPPPKSKLKKTAIIGKHSLPSWQITGLVEYVSAGPQPGGFYFAVPRGVHAVRLGNRATIS QTLDLNKASNKSTASSSSSVYSLTFGATKTCAQDEVLRVTVADGGTGGVVYSASDLPLQTLYSSDGGDTYAVAFTVGGRVESVRVSFYNPGVQEDPACGP LLDAVAIKHIPPLSYSPGNLVKNGGFETGPHVFKNLSTGVLLPPKAMDKTSPLPGWIVESLKPVKYIDSTHFSVPSGLAAVELVAGRESAIAQVIRTVPR KTYKLTFSIGDAKNGCHGSMMVEAFAADKTVKVPFVSVGKGGFKVANLVFQAQSERTRVTFYSGYYHTKLNDYGHLCGPVLDDVKVILVMS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41810			Protein of unknown function, D...		Lus10031067 [exp]	0	1
					Lus10041915 [exp]	3.3	0.9265
AT3G07620			Exostosin family protein (.1)		Lus10008751 [exp]	5.0	0.9192
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10030478 [exp]	5.3	0.9217
AT5G60700			glycosyltransferase family pro...		Lus10041317 [exp]	6.8	0.9232
AT1G51190	AP2_ERF	PLT2	PLETHORA 2, Integrase-type DNA...		Lus10031260 [exp]	7.1	0.9230
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10031285 [exp]	7.5	0.9148
AT3G58180			ARM repeat superfamily protein...		Lus10007032 [exp]	10.1	0.9046
AT5G15640			Mitochondrial substrate carrie...		Lus10035134 [exp]	10.2	0.9025
AT3G20840	AP2_ERF	PLT1	PLETHORA 1, Integrase-type DNA...		Lus10031831 [exp]	10.8	0.9103
AT1G79580	NAC	ANAC033, SMB, N...	NAC (No Apical Meristem) domai...		Lus10009939 [exp]	14.0	0.9049

Compare expression of checked genes

Lus10031067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.