Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22250 337 / 5e-113 UDP-Glycosyltransferase superfamily protein (.1) AT5G05870 167 / 2e-47 UGT76C1 UDP-glucosyl transferase 76C1 (.1) AT5G05880 149 / 2e-40 UDP-Glycosyltransferase superfamily protein (.1) AT3G11340 148 / 2e-40 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT3G02100 144 / 1e-38 UDP-Glycosyltransferase superfamily protein (.1) AT5G05900 141 / 8e-38 UDP-Glycosyltransferase superfamily protein (.1) AT5G05860 140 / 2e-37 UGT76C2 UDP-glucosyl transferase 76C2 (.1) AT5G59580 140 / 3e-37 UGT76E1 UDP-glucosyl transferase 76E1 (.1) AT5G59590 138 / 9e-37 UGT76E2 UDP-glucosyl transferase 76E2 (.1) AT5G17030 138 / 1e-36 UGT78D3 UDP-glucosyl transferase 78D3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035452 [exp] 166 / 4e-51 AT3G22250 76 / 9e-18 UDP-Glycosyltransferase superfamily protein (.1) Lus10015751 [exp] 170 / 3e-48 AT3G02100 281 / 7e-90 UDP-Glycosyltransferase superfamily protein (.1) Lus10003455 [exp] 167 / 2e-47 AT3G02100 291 / 1e-93 UDP-Glycosyltransferase superfamily protein (.1) Lus10003453 [exp] 167 / 2e-47 AT3G02100 276 / 6e-88 UDP-Glycosyltransferase superfamily protein (.1) Lus10015749 [exp] 166 / 1e-46 AT3G02100 274 / 6e-87 UDP-Glycosyltransferase superfamily protein (.1) Lus10003454 [exp] 164 / 3e-46 AT3G02100 268 / 1e-84 UDP-Glycosyltransferase superfamily protein (.1) Lus10034699 [exp] 164 / 8e-46 AT3G02100 285 / 2e-91 UDP-Glycosyltransferase superfamily protein (.1) Lus10015745 [exp] 163 / 1e-45 AT3G02100 288 / 1e-92 UDP-Glycosyltransferase superfamily protein (.1) Lus10040533 [exp] 160 / 4e-45 AT3G02100 256 / 1e-80 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G019400 [exp] 379 / 4e-129 AT3G22250 494 / 3e-173 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G084900 [exp] 171 / 5e-49 AT3G02100 307 / 9e-100 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G123500 [exp] 165 / 1e-46 AT3G02100 439 / 9e-152 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G091500 [exp] 158 / 6e-44 AT3G02100 454 / 9e-158 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G195500 [exp] 154 / 1e-42 AT3G11340 483 / 3e-169 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Potri.010G195300 [exp] 150 / 3e-41 AT3G11340 485 / 6e-170 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Potri.010G195600 [exp] 149 / 1e-40 AT3G55700 515 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G119700 [exp] 148 / 2e-40 AT3G02100 457 / 8e-159 UDP-Glycosyltransferase superfamily protein (.1) Potri.013G022800 [exp] 145 / 5e-39 AT3G02100 302 / 9e-98 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G022500 [exp] 143 / 3e-38 AT1G22400 514 / 3e-180 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10031068 pacid=23166723 polypeptide=Lus10031068 locus=Lus10031068.g ID=Lus10031068.BGIv1.0 annot-version=v1.0 ATGGAACAGGCGTCGGCAGGGCAGTTGGAGGGCGTGGTCCGCAGGGTGATTGATGAAGAAGGGTCTTGTTGTTGTTGTATGGTGGTTGATTTGTTGGTTT CCTCCGCCCTTGACGTGGCCAGGAGATGCGGGGTTCCGGTTGCTGGGTTTTGGCCGGCGTCGCTTCTTTCTTACAGGCTCATCGCCGCTATTCCGCAGTT GGTCGCCTCTGGGATCATTCATCCTCATACAGGAATCCCTCAACACCAAGGACTTTCCATTGGCGGCCTTGAACCCAATCAGCCTCCTCTCACATCAGAT GATCTCCCATGGCTGATCGGAAGCCTAACCGCAAGAAAAGCCAGGTTCAAATTCTGGACCAAGACCTTACATCGTTCCACAAACCTCCAATGCATCCTAG TCAACTCCTTCCAAGAACTCGACCGTGACGACGATAGCAATAACCCATCCCTCCACAAGCCACAACGAATCCTACAAGTCGGACCCTTGATCGAGGACCA ACCCCGATCCACGATCAGCTTATGGGACCACGATTCGACCTGCTTGCAATGGCTAGACACCCAGAAACCGAGATCGGTAGTCTACATCTCCTTTGGCAGC TGGGTTAGCCCCATTGGAGAGTCCAAAGTCATGGCATTAGCCACAGCCCTCGAAGCGATAGGGACACCCTTCATTTGGGTTCTGGGATCTGCCTGGAGAC AAGGTTTGCCTTCTGGGTATGAGGAAAGGCTGTCGATTCGTGGAGGAGGACAAGTCGTGAAGTGGGCACCGCAAATGGAAGTTTTGATGCACATTGCTGT AGGGTGCTACCTCACACACTGCGGATGGAACTCGACGATGGAGGCCATACAGTGCCGAAAACGGATGCTTTGCTACCCGATCGCCGGGGACCAATTCGTG AACTGTAAGTATGTCGTGGAGAAGTGGCGAGTTGGAGTGAGGTTGAATGGGTTTGGGAGGTGTGATGTTGAGGAAGGTCTGAGGAAGATAATGTGTGAGA GTGATCCTGGGAATGGAGAGATGAGTTGTAGGTTGGATAAGTTGTGTGAAATGAGTACGGGTAAGGTAGCTAATCTTAAGAGGATGGCTAATCTCAATAG CTTTGTTGATCTTGTTATGGACAAATGTTAA
AA sequence Show only first row Show all	>Lus10031068 pacid=23166723 polypeptide=Lus10031068 locus=Lus10031068.g ID=Lus10031068.BGIv1.0 annot-version=v1.0 MEQASAGQLEGVVRRVIDEEGSCCCCMVVDLLVSSALDVARRCGVPVAGFWPASLLSYRLIAAIPQLVASGIIHPHTGIPQHQGLSIGGLEPNQPPLTSD DLPWLIGSLTARKARFKFWTKTLHRSTNLQCILVNSFQELDRDDDSNNPSLHKPQRILQVGPLIEDQPRSTISLWDHDSTCLQWLDTQKPRSVVYISFGS WVSPIGESKVMALATALEAIGTPFIWVLGSAWRQGLPSGYEERLSIRGGGQVVKWAPQMEVLMHIAVGCYLTHCGWNSTMEAIQCRKRMLCYPIAGDQFV NCKYVVEKWRVGVRLNGFGRCDVEEGLRKIMCESDPGNGEMSCRLDKLCEMSTGKVANLKRMANLNSFVDLVMDKC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22250			UDP-Glycosyltransferase superf...		Lus10031068 [exp]	0	1
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10026061 [exp]	8.7	0.7440
AT2G03810			18S pre-ribosomal assembly pro...		Lus10019193 [exp]	9.2	0.7516
AT5G15240			Transmembrane amino acid trans...		Lus10005239 [exp]	18.9	0.7358
AT1G18870		ATICS2, ICS2	ARABIDOPSIS ISOCHORISMATE SYNT...		Lus10024255 [exp]	21.9	0.6829
AT1G27461			unknown protein		Lus10018671 [exp]	22.8	0.7293
					Lus10039759 [exp]	23.5	0.7478
AT2G35270	AT-hook	GIK, 2-ATH, AHL...	GIANT KILLER, Predicted AT-hoo...		Lus10000519 [exp]	26.2	0.7426
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Lus10027228 [exp]	27.6	0.7327
AT1G06930			unknown protein		Lus10034209 [exp]	32.1	0.7213
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10025151 [exp]	33.2	0.7053

Compare expression of checked genes

Lus10031068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.