Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67940 268 / 7e-92 ABCI17, AtSTAR1, ATNAP3 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) AT5G46540 95 / 4e-23 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1) AT3G28380 94 / 1e-22 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1) AT1G10680 93 / 3e-22 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT3G28415 92 / 3e-22 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1) AT4G18050 91 / 2e-21 ABCB9, PGP9 ATP-binding cassette B9, P-glycoprotein 9 (.1) AT1G27940 91 / 2e-21 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT3G28390 90 / 4e-21 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT3G28860 87 / 2e-20 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT3G28360 86 / 5e-20 ABCB16, PGP16 ATP-binding cassette B16, P-glycoprotein 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035453 [exp] 326 / 2e-114 AT1G67940 371 / 1e-130 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) Lus10000910 [exp] 92 / 5e-22 AT4G25960 808 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Lus10004571 [exp] 92 / 5e-22 AT4G25960 1732 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Lus10032911 [exp] 92 / 7e-22 AT3G28860 960 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10017271 [exp] 91 / 2e-21 AT1G27940 1689 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10024162 [exp] 91 / 2e-21 AT3G28345 1280 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10015595 [exp] 90 / 3e-21 AT3G28860 971 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10039533 [exp] 89 / 5e-21 AT3G28345 1288 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10009989 [exp] 89 / 6e-21 AT2G47000 1754 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G132000 [exp] 276 / 8e-95 AT1G67940 390 / 3e-138 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) Potri.003G094400 [exp] 92 / 6e-22 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.002G019600 [exp] 91 / 1e-21 AT1G27940 1654 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Potri.001G139600 [exp] 91 / 2e-21 AT4G25960 1962 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.017G074000 [exp] 90 / 4e-21 AT3G28345 1831 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.015G059800 [exp] 88 / 1e-20 AT5G39040 887 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059700 [exp] 88 / 1e-20 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059600 [exp] 88 / 1e-20 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.017G081100 [exp] 87 / 4e-20 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.001G354900 [exp] 86 / 7e-20 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10031069 pacid=23166843 polypeptide=Lus10031069 locus=Lus10031069.g ID=Lus10031069.BGIv1.0 annot-version=v1.0 ATGGACGTCCTCTCCCTCCGCCGTAAAGTCGGGATGCTATTCCAGCTCCCGGCGCTCTTCCAAGGGACGGTAGCCGACAACGTCCGGTACGGCCCGCAGT TGAGAGGGAAAAAGATCTCGGACAAGGAGGTATACAACCTCCTGGCGATGGCGGATCTGGACTCGTCGTGTTATAGCAAGCCTGGGAGTGAGCTTTCCGT TGGGCAGCAGCAGAGGGTGGCTCTGGCTAGGACGCTGGCGAACGAGCCGGAGGTCTTGCTGCTGGACGAGCCGACGAGCGCTCTGGATCCGATCTCGACG CAGAACGTGGAGGATGTTCTGGTTAAGCTGAAGAAGGAGCGTGGGATGACTGTGGTGATGGTTTCCCACAGCGTGAAGCAGATCCAGAGGGTCGCCGATT TGGTGTTGTTGCTTGTCGATGGCGAGATTGTGGAGGTTGTGACGCCGGAGAAGCTCTGTGAAGCTAAGCATCCCATGGCTGTCAGGTTTCTTGAGCTCAG TTCTTGA
AA sequence Show only first row Show all	>Lus10031069 pacid=23166843 polypeptide=Lus10031069 locus=Lus10031069.g ID=Lus10031069.BGIv1.0 annot-version=v1.0 MDVLSLRRKVGMLFQLPALFQGTVADNVRYGPQLRGKKISDKEVYNLLAMADLDSSCYSKPGSELSVGQQQRVALARTLANEPEVLLLDEPTSALDPIST QNVEDVLVKLKKERGMTVVMVSHSVKQIQRVADLVLLLVDGEIVEVVTPEKLCEAKHPMAVRFLELSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67940		ABCI17, AtSTAR1...	ARABIDOPSIS THALIANA NON-INTRI...		Lus10031069 [exp]	0	1
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10035260 [exp]	1.0	0.9710
AT1G72890			Disease resistance protein (TI...		Lus10006929 [exp]	1.7	0.9604
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033365 [exp]	2.4	0.9670
AT1G51340			MATE efflux family protein (.1...		Lus10042365 [exp]	5.8	0.9413
AT3G54850		ATPUB14	plant U-box 14 (.1)		Lus10037970 [exp]	9.2	0.9398
AT5G61820			unknown protein		Lus10017316 [exp]	10.0	0.9511
AT1G59171			Inositol-pentakisphosphate 2-k...		Lus10033202 [exp]	10.1	0.9117
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10011204 [exp]	11.5	0.9439
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10016537 [exp]	11.7	0.9467
AT4G35160			O-methyltransferase family pro...		Lus10013945 [exp]	12.2	0.9318

Compare expression of checked genes

Lus10031069 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.