Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57440 79 / 2e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042062 [exp] 142 / 1e-41 AT3G57440 92 / 4e-22 unknown protein Lus10018069 [exp] 140 / 4e-39 AT5G13630 413 / 3e-132 ABA-BINDING PROTEIN, magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (.1), magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G050900 [exp] 102 / 2e-26 AT3G57440 76 / 9e-17 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031072 pacid=23166832 polypeptide=Lus10031072 locus=Lus10031072.g ID=Lus10031072.BGIv1.0 annot-version=v1.0 ATGCAAATTGCTGAGTCTTCTTCTCCCTTCCCCTCGACTCTGGAACGCACCGCCTCCGACGCACTCCTCCTCCTTGCCACCACTGCCGTCATTCCTTCTC CGTCCGGCCCAGAACCTTGTTTCGATGCCGAGTTTCTGAGCGAACTCAAGAACAAGACTGCGGCTGAGAGGAACTTCAGCTTGATTCCTGGTAGCGGCTC CGGATCTTGCATCTCGTCGTCGACATCGGTGGTTCCGGCTCACAGGCACATCGTTGCCGTTGTTGCTCGCGGATACGACATGCTCAAGTGTGTGAGGAAG AAGAGGTCTGAAGTCTGCTGGAGCTCTATTACTCGTAGGGAACCCGTCCATGGATATCCTCCATCGTCAAAATCAGATTCCATAGGAACTTCCTGCCTCT CCACCACGTCCACGGCCGCTTCACAGAAGAGCCAAACAAAGAATACAAAGCCCAGCTTTGCAAAAAAGCAGAGGAATAAGCAGGGGTCCGGATCTTCTCT CATTAAACACCGAGCCGACTCGATTCTGAAGCTGCTGGCTGGCGGCTCATCCTCTGAAGTCAGTATTCGTCAGTTGCTTGGTAACAGTCCTGACACAAGC AAAGCTCTCAGAATGCTGCTAAGGCGGAATGAGGTCAAGAGATCAGGAACAGGAGGACGTCAGGATCCTTATATTTACAAGGTTGCTTGA
AA sequence Show only first row Show all	>Lus10031072 pacid=23166832 polypeptide=Lus10031072 locus=Lus10031072.g ID=Lus10031072.BGIv1.0 annot-version=v1.0 MQIAESSSPFPSTLERTASDALLLLATTAVIPSPSGPEPCFDAEFLSELKNKTAAERNFSLIPGSGSGSCISSSTSVVPAHRHIVAVVARGYDMLKCVRK KRSEVCWSSITRREPVHGYPPSSKSDSIGTSCLSTTSTAASQKSQTKNTKPSFAKKQRNKQGSGSSLIKHRADSILKLLAGGSSSEVSIRQLLGNSPDTS KALRMLLRRNEVKRSGTGGRQDPYIYKVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57440			unknown protein		Lus10031072 [exp]	0	1
AT5G15800	MADS	AGL2, SEP1	SEPALLATA1, AGAMOUS-like 2, K-...		Lus10011349 [exp]	1.4	0.9870
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Lus10008208 [exp]	2.0	0.9516
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10011350 [exp]	2.0	0.9699
AT1G17260		AHA10	autoinhibited H\(+\)-ATPase is...		Lus10037466 [exp]	3.9	0.9629
AT2G28610	HD	PRS1, PRS, WOX3	WUSCHEL RELATED HOMEOBOX 3, PR...		Lus10023332 [exp]	7.7	0.9233
AT2G45970		CYP86A8, LCR	LACERATA, "cytochrome P450, fa...		Lus10018830 [exp]	8.4	0.9133
AT5G02540			NAD(P)-binding Rossmann-fold s...		Lus10025321 [exp]	8.9	0.8877
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10028814 [exp]	17.3	0.8502
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Lus10019086 [exp]	29.5	0.9412
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Lus10013956 [exp]	30.7	0.8494

Compare expression of checked genes

Lus10031072 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.