Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60440 130 / 3e-36 MADS AGL62 AGAMOUS-like 62 (.1) AT2G24840 121 / 2e-33 MADS DIA, AGL61 DIANA, AGAMOUS-like 61 (.1) AT4G36590 102 / 4e-26 MADS MADS-box transcription factor family protein (.1) AT1G01530 96 / 1e-23 MADS AGL28 AGAMOUS-like 28 (.1) AT2G34440 84 / 5e-20 MADS AGL29 AGAMOUS-like 29 (.1) AT1G65360 84 / 3e-19 MADS AGL23 AGAMOUS-like 23 (.1) AT3G66656 82 / 4e-19 MADS AGL91 AGAMOUS-like 91 (.1) AT1G29962 77 / 2e-17 MADS AGL64 AGAMOUS-like 64 (.1) AT4G22950 76 / 2e-16 MADS AGL19 AGAMOUS-like 19 (.1) AT4G24540 75 / 3e-16 MADS AGL24 AGAMOUS-like 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035456 [exp] 465 / 2e-168 AT5G60440 124 / 5e-34 AGAMOUS-like 62 (.1) Lus10012449 [exp] 129 / 3e-36 AT5G60440 157 / 4e-47 AGAMOUS-like 62 (.1) Lus10020511 [exp] 127 / 1e-35 AT5G60440 162 / 9e-49 AGAMOUS-like 62 (.1) Lus10030824 [exp] 95 / 5e-24 AT2G24840 124 / 4e-35 DIANA, AGAMOUS-like 61 (.1) Lus10030663 [exp] 92 / 7e-23 AT2G24840 122 / 2e-34 DIANA, AGAMOUS-like 61 (.1) Lus10015726 [exp] 89 / 2e-21 AT5G60440 102 / 2e-26 AGAMOUS-like 62 (.1) Lus10015271 [exp] 86 / 2e-20 AT2G24840 114 / 6e-31 DIANA, AGAMOUS-like 61 (.1) Lus10003481 [exp] 86 / 4e-20 AT5G60440 99 / 7e-25 AGAMOUS-like 62 (.1) Lus10037450 [exp] 84 / 2e-19 AT5G60440 101 / 7e-26 AGAMOUS-like 62 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G047300 [exp] 162 / 3e-49 AT5G60440 185 / 2e-57 AGAMOUS-like 62 (.1) Potri.007G113800 [exp] 159 / 7e-48 AT5G60440 191 / 4e-60 AGAMOUS-like 62 (.1) Potri.009G084200 [exp] 139 / 2e-40 AT5G60440 211 / 2e-68 AGAMOUS-like 62 (.1) Potri.001G251400 [exp] 115 / 1e-31 AT5G60440 112 / 3e-30 AGAMOUS-like 62 (.1) Potri.004G130900 [exp] 114 / 4e-31 AT3G04100 140 / 5e-42 AGAMOUS-like 57 (.1) Potri.009G084100 [exp] 108 / 1e-28 AT5G60440 163 / 2e-49 AGAMOUS-like 62 (.1) Potri.008G041500 [exp] 107 / 3e-28 AT5G60440 147 / 4e-43 AGAMOUS-like 62 (.1) Potri.009G045900 [exp] 105 / 9e-28 AT3G04100 121 / 2e-34 AGAMOUS-like 57 (.1) Potri.004G131100 [exp] 100 / 9e-26 AT2G34440 137 / 2e-41 AGAMOUS-like 29 (.1) Potri.009G046100 [exp] 95 / 3e-24 AT5G60440 115 / 6e-32 AGAMOUS-like 62 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10031073 pacid=23166758 polypeptide=Lus10031073 locus=Lus10031073.g ID=Lus10031073.BGIv1.0 annot-version=v1.0 ATGGTGAGAATTGAGAACGATAGCAATAGAATGGTGACATTCTCCAAGAGGAGGAGTGGTGTTTTCAAAAAGGCCAGTGAGCTCTCTACACTCTGTGGTG CTGAGGTGGCCATTGTGGTCTTTTCACCTGGTAATCGGGTGTTTTCATTTGGTAATCCAAGTGTGGAAAATATTATGAATCAGTTTTACTCAGGTGGACG ATTCTCACACCACCATTCTGATATGACTGCTCACATCATGGAGGCTCAGAGGAAATCTAAGATTGATGCACTCAACATCGAACTCACTCAGATACTGGAA AACAATGACAAATGCAAGAAAAGGGGTGAACAGCTGGACAACCTGTTGACGGTTCACCTAAACAGGAGGACTATTGCCGAGACCCCTATGGATGAAATGA ATCAGGCCCAACTACTCCAGTACAGGGCCGGTCTTGAAACCCTGCAGGCTGGGGTCCTTATCCAAGCCCAAACGAGGGCCCAAGCTTTTGAAGAAGCTCA GGCCTACTTGGCCCAGAATCAGCCTCCCGCCCAACCAGTCTTCATGAATCCGGCACCATTGCCTCGCGTCACTGATCTTATTCAAGTTGCTCAGCCTGAA TTTGCTGTCAATCCTGCAACTACCGGGAACTATGAGTTCTATCAGAGATTCAGCAATGAGAATTCCGATTCGGTCCCTGCAGGCGACGGGAATATGATGG TCAATGGCCCTTTTGGGTATGGGCATGGCGCTGGACCTTCTGCTTGA
AA sequence Show only first row Show all	>Lus10031073 pacid=23166758 polypeptide=Lus10031073 locus=Lus10031073.g ID=Lus10031073.BGIv1.0 annot-version=v1.0 MVRIENDSNRMVTFSKRRSGVFKKASELSTLCGAEVAIVVFSPGNRVFSFGNPSVENIMNQFYSGGRFSHHHSDMTAHIMEAQRKSKIDALNIELTQILE NNDKCKKRGEQLDNLLTVHLNRRTIAETPMDEMNQAQLLQYRAGLETLQAGVLIQAQTRAQAFEEAQAYLAQNQPPAQPVFMNPAPLPRVTDLIQVAQPE FAVNPATTGNYEFYQRFSNENSDSVPAGDGNMMVNGPFGYGHGAGPSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10031073 [exp]	0	1
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10000843 [exp]	5.8	1.0000
AT5G12180		CPK17	calcium-dependent protein kina...		Lus10000889 [exp]	8.7	1.0000
AT1G18100		MFT, E12A11	MOTHER OF FT AND TFL1, PEBP (p...		Lus10002592 [exp]	11.8	1.0000
AT2G38500			2-oxoglutarate (2OG) and Fe(II...		Lus10006093 [exp]	12.7	1.0000
					Lus10001326 [exp]	13.0	1.0000
AT3G49210			O-acyltransferase (WSD1-like) ...		Lus10022417 [exp]	13.4	1.0000
					Lus10003843 [exp]	16.1	1.0000
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	18.1	1.0000
					Lus10022172 [exp]	18.1	1.0000
					Lus10022996 [exp]	18.5	1.0000

Compare expression of checked genes

Lus10031073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.