Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41770 1168 / 0 Protein of unknown function (DUF288) (.1) AT3G57420 1123 / 0 Protein of unknown function (DUF288) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035458 [exp] 1487 / 0 AT2G41770 1204 / 0.0 Protein of unknown function (DUF288) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G055700 [exp] 1230 / 0 AT2G41770 1202 / 0.0 Protein of unknown function (DUF288) (.1) Potri.006G051000 [exp] 1224 / 0 AT2G41770 1199 / 0.0 Protein of unknown function (DUF288) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03385 [flax] [poplar] STELLO STELLO glycosyltransferases
Representative CDS sequence Show only first row Show all	>Lus10031076 pacid=23166784 polypeptide=Lus10031076 locus=Lus10031076.g ID=Lus10031076.BGIv1.0 annot-version=v1.0 ATGGTTCAGAACCGATCTCCGTCGTCGCCGCCTCAATCTCCCAAATCAAACTCCAAATCTCATCTTCCAACAACGGTCGTCCACCGCCAAATTCCCTCCC GCAGATTCTCGCCTTCCAAATCCCTAGACTTCTGCACTTGGTTCTCCGAAAACCTCTACAAGATCGCCACCGTCGCTTTCCTGGTCTTCACCGACGCTGC ACCCTCACTCCTCGCACTCTTCTTCCTCCGTAACGCCGGGGACACCTCAGCTTTCCTCTACCTCCAATCCAAATCTCACTCAATCGAGAAAACCCTCCAC CACCCTCAAATCGAGTGGAACAAGATCCCACCCCTGAGAGATTCTTCATCGCCCTACGCCAATTTCCGCACGGAGAAGTGGATCGTGGTCTCAGTCTCCG ATTACCCATCCGACTCACTGACGCAGCTAGTCAAGATCAGAGGGTGGCAGCTGCTTGCCGTGGGGGATTCCAGGACGCCTTCCGATTGGTCGCTGAAAGG AGCGGTATTCTTGTCTTTGGAACAGCAAGCTACTCTGGGGTTTAGGGTTGTTGATTACTTGCCTTATCGTTCCTTTGTGAGGAAGAGTGTGGGTTATCTG TTTGCAATTCAACATGGGGCGAAGAAGATCTTTGATGCTGATGATCGTGGAGAAGTGATTGGAGACGATTTAGGGAAGCATTTTGATGTGGATTTGTCTG GGGAAGGAGCTAGGAATGAGCCTCTTTTACAGTATAGTCATGAAAATGTGAATAGGACTGTAGTGAATCCTTACGTTCATTTTGGGCAGAGATCGGTTTG GCCTAGAGGGTTGCCATTAGAGAATGTTGGAGAAATTGGGCATGAAGAGTTCTACACTGAGATTTATGGTGGCAAGCAGTTTATACAGCAAGGTATATCT AATGGATTGCCTGATGTTGATTCTGTGTTCTACTTCACGAGGAAAGCTGTGTTGGAGGCTTTCGATGTTAGGTTCGACGATCATGCACCCAAGGTAGCAT TGCCTCAAGGGATGATGGTGCCTGTTAATTCGTTTAATACGATGTACCATTCGCCTGCATTTTGGGGGTTGATGCTTCCTGTTTCAGTAAGTACAATGGC GGCTGATGTGCTAAGAGGTTACTGGAGCCAAAGGCTGTTGTGGGAGATTGGTGGGTTTGTCGTGGTTTATCCACCTACGGTACATCGATATGATAAGATT GAAGGGTACCCGTTCTCGGAGGAGAAAGATCTACACGTTAATGTTGGTAGGCTGATAAAGTTCTTGGTTGCTTGGAGATCGACCAAGCACAGGTTGTTTG AGAAGGTTATGGATCTGAGTTTCGCAATGGCGGAGGAAGGGTTTTGGAGTGAGCAAGATGTGAAATTTACTGCTGCTTGGTTACAGGACTTGGTTGCTGT TGGCTATCAGCAACCTAGGTTGATGTCATTGGAATTGGATAGGCCGCGGCCAACGATTGGTCATGGAGATCGTAAGGAGTTCATCCCTCGTAAATTGCCA TCTGTCCATCTTGGAGTTGAGGAAACAGGAACAGTTAATTATGAAATTGGTAACTTGATTAGATGGAGGAAGAACTTCGGAAACGTTGTTCTTGTTATGT TCTGCAGTGGGCCCGTTGAGCGCACTGCTCTTGAATGGAGATTGCTCTATGGCCGGATATTCAAAACTGTGATTATTTTGTCGGAGCAGAAGAATGAAGA TCTTGTTGTTGAAGAAGGCCATCTGGACCAGATGTACAAACTTATGCCTAAGATATTCAAGCGGTATGGCAGTGCAGAAGGTTTCCTGTTCCTTCAGGAT GATACCATTCTTAATTACTGGAATCTGCATCAAGCTGACAAAGCGAAGTTATGGATCACTGATAAGGTATCCGAGTCTTGGAATAATGTGGAACCCAGTG GAGAGTGGTTGACTAAGCAAGCTGAAATGGTGAAGCAAGTGGTTGACTCGATGCCAGTCCACTTCCAAGTCAACTATAAGGAAGCCGTGAAGAGTGAGAA GAGCTTACTGCTCTGCAGTTCGGAGATATTCTACGTTTCTCGCCAGTTTGTCAGTGACTTTGTAGACCTTGTTGCCCTTGTGGGTAGTCAGGAGATGCAT CAAAAGGTAGCCATACCAATGTTCTTCGTCTCGATGGATTCACCTCAGAACTTCGACCCAATCTTGAGCACAATGGTGTATGAACAGACGCCACCGGTGT CACAGGCAAATTCAACGTTGTATTCCGCTCAAGCACCGGCTGTCCATCCGTGGAGCGTGTCGAGTGAACAAGAGTTCATAAAGCTCGTAAGAATAATGGC GGAAGGGGACCCTCTTCTCATGGAACTTGTCTGA
AA sequence Show only first row Show all	>Lus10031076 pacid=23166784 polypeptide=Lus10031076 locus=Lus10031076.g ID=Lus10031076.BGIv1.0 annot-version=v1.0 MVQNRSPSSPPQSPKSNSKSHLPTTVVHRQIPSRRFSPSKSLDFCTWFSENLYKIATVAFLVFTDAAPSLLALFFLRNAGDTSAFLYLQSKSHSIEKTLH HPQIEWNKIPPLRDSSSPYANFRTEKWIVVSVSDYPSDSLTQLVKIRGWQLLAVGDSRTPSDWSLKGAVFLSLEQQATLGFRVVDYLPYRSFVRKSVGYL FAIQHGAKKIFDADDRGEVIGDDLGKHFDVDLSGEGARNEPLLQYSHENVNRTVVNPYVHFGQRSVWPRGLPLENVGEIGHEEFYTEIYGGKQFIQQGIS NGLPDVDSVFYFTRKAVLEAFDVRFDDHAPKVALPQGMMVPVNSFNTMYHSPAFWGLMLPVSVSTMAADVLRGYWSQRLLWEIGGFVVVYPPTVHRYDKI EGYPFSEEKDLHVNVGRLIKFLVAWRSTKHRLFEKVMDLSFAMAEEGFWSEQDVKFTAAWLQDLVAVGYQQPRLMSLELDRPRPTIGHGDRKEFIPRKLP SVHLGVEETGTVNYEIGNLIRWRKNFGNVVLVMFCSGPVERTALEWRLLYGRIFKTVIILSEQKNEDLVVEEGHLDQMYKLMPKIFKRYGSAEGFLFLQD DTILNYWNLHQADKAKLWITDKVSESWNNVEPSGEWLTKQAEMVKQVVDSMPVHFQVNYKEAVKSEKSLLLCSSEIFYVSRQFVSDFVDLVALVGSQEMH QKVAIPMFFVSMDSPQNFDPILSTMVYEQTPPVSQANSTLYSAQAPAVHPWSVSSEQEFIKLVRIMAEGDPLLMELV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41770			Protein of unknown function (D...		Lus10031076 [exp]	0	1
AT2G41770			Protein of unknown function (D...		Lus10035458 [exp]	1.0	0.9837
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10004656 [exp]	3.0	0.9574
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10026657 [exp]	3.7	0.9645
AT4G36790			Major facilitator superfamily ...		Lus10026037 [exp]	4.1	0.9389
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10040847 [exp]	6.3	0.9481
AT5G01890			Leucine-rich receptor-like pro...		Lus10022738 [exp]	6.3	0.9368
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10038350 [exp]	7.2	0.9418
AT2G01970			Endomembrane protein 70 protei...		Lus10042286 [exp]	9.5	0.9415
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10012348 [exp]	10.4	0.9202
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10034289 [exp]	10.5	0.9478

Compare expression of checked genes

Lus10031076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.