Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21240 323 / 5e-111 BBR_BPC BPC4, BBR/BPC4, ATBPC4 basic pentacysteine 4 (.1.2) AT4G38910 298 / 2e-101 BBR_BPC BPC5, BBR/BPC5, ATBPC5 basic pentacysteine 5 (.1.2) AT5G42520 207 / 4e-65 BBR_BPC BPC6, BBR/BPC6, ATBPC6 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) AT2G35550 155 / 3e-46 BBR_BPC BPC7, BBR/BPC7, ATBPC7 basic pentacysteine 7 (.1.2.3.4) AT1G14685 149 / 5e-43 BBR_BPC BBR/BPC2, ATBPC2, BPC2 basic pentacysteine 2 (.1.2.3) AT2G01930 145 / 7e-42 BBR_BPC BPC1, BBR/BPC1, ATBPC1 basic pentacysteine1 (.1.2) AT1G68120 144 / 2e-41 BBR_BPC BPC3, BBR/BPC3, ATBPC3 basic pentacysteine 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035462 [exp] 563 / 0 AT2G21240 325 / 2e-109 basic pentacysteine 4 (.1.2) Lus10018060 [exp] 397 / 7e-140 AT2G21240 355 / 1e-123 basic pentacysteine 4 (.1.2) Lus10042056 [exp] 390 / 2e-137 AT2G21240 350 / 1e-121 basic pentacysteine 4 (.1.2) Lus10012389 [exp] 263 / 9e-87 AT5G42520 432 / 1e-152 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) Lus10024313 [exp] 262 / 2e-86 AT5G42520 436 / 5e-154 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) Lus10023543 [exp] 148 / 1e-42 AT2G01930 292 / 5e-99 basic pentacysteine1 (.1.2) Lus10040427 [exp] 148 / 1e-42 AT2G01930 295 / 4e-100 basic pentacysteine1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G125300 [exp] 393 / 3e-138 AT2G21240 377 / 5e-132 basic pentacysteine 4 (.1.2) Potri.004G163700 [exp] 390 / 3e-137 AT2G21240 378 / 3e-132 basic pentacysteine 4 (.1.2) Potri.005G235900 [exp] 255 / 7e-84 AT5G42520 428 / 6e-151 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) Potri.002G026700 [exp] 190 / 2e-58 AT5G42520 439 / 2e-155 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) Potri.015G032900 [exp] 154 / 3e-45 AT1G14685 259 / 3e-86 basic pentacysteine 2 (.1.2.3) Potri.012G040700 [exp] 151 / 5e-44 AT1G14685 247 / 1e-81 basic pentacysteine 2 (.1.2.3) Potri.015G032800 [exp] 148 / 1e-42 AT1G14685 268 / 9e-90 basic pentacysteine 2 (.1.2.3) Potri.010G101400 [exp] 147 / 2e-42 AT1G14685 300 / 1e-102 basic pentacysteine 2 (.1.2.3) Potri.008G140200 [exp] 147 / 2e-42 AT2G01930 296 / 1e-100 basic pentacysteine1 (.1.2) Potri.001G133900 [exp] 144 / 4e-42 AT2G35550 199 / 3e-64 basic pentacysteine 7 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06217 [flax] [poplar] GAGA_bind GAGA binding protein-like family
Representative CDS sequence Show only first row Show all	>Lus10031078 pacid=23166786 polypeptide=Lus10031078 locus=Lus10031078.g ID=Lus10031078.BGIv1.0 annot-version=v1.0 ATGAATGATGGTAGTCAACATCAAAATGGTAGTTACAATGAGCAGCATAATACAACGCATTCACCGTGGAATATGGTCCCACAGCATCAGGGGAAGGAAC AAGCAAATGCCTTAATGAAGAACAAGAAAATTATGGGCATCATTGCCGAGAGGGATGCAGCCATTCAAGAACGCAATCTTGCTCTATCCGAGAAAAGGGA AGCCCTGGCTGCCCGAGACGAAGCAATCCAGCAGCGACAGAAAGCCCTAATCGAGAGAGATAAAGCCTTGATGGAGCGGGACAATGCCTATGCAGCAATT CGATACCGTGAAAACGAAATGAGCTTCTCCTCAAGCCAGCATGGTGGATCTAAGCGTATCCCACATCCTGTTTACCTCCGTAACGACTTGGAAGATGACG AAGAAGTAGCAGCTAACAAGCAGCCCAAGCTATCGAAAGAGAACAATGCAGTATCTCTGAAGGCAACTAAACCGCGGAAGAAGGGGAGCAAAACTGTAGA GGACGGTCCTCCGAACAGACAAGCCATCGTGGCTGTTGTATCTGAAGGAACAAAGTTTAGGTCTGAATGGGATGCACTGGACATGGAGCTGAACCTAATC AGCTACGATGAATCGATGATGCCACCGCCAGTCTGCTCATGCACGGGAACTCCGCATCAGTGCTACAAATGGGGGAGCGGTGGGTGGCAATCTTCATGCT GCACGACCACCATTTCTTGCCATCCACTCCCACAGCTTCCTAACAAGCGCCACTCTCGAGTGGGCGGCAGGAAGATGAGCAGCGGCGTGTTCGCTAAGCT GCTGAGCCGGCTCGCTGCAGCAGGACATGATCTGTCTGTTCCTCTCGATCTTAAGGACTACTGGGCTAGACACGGCACCAACCGCTACATCACCATAAAG TAG
AA sequence Show only first row Show all	>Lus10031078 pacid=23166786 polypeptide=Lus10031078 locus=Lus10031078.g ID=Lus10031078.BGIv1.0 annot-version=v1.0 MNDGSQHQNGSYNEQHNTTHSPWNMVPQHQGKEQANALMKNKKIMGIIAERDAAIQERNLALSEKREALAARDEAIQQRQKALIERDKALMERDNAYAAI RYRENEMSFSSSQHGGSKRIPHPVYLRNDLEDDEEVAANKQPKLSKENNAVSLKATKPRKKGSKTVEDGPPNRQAIVAVVSEGTKFRSEWDALDMELNLI SYDESMMPPPVCSCTGTPHQCYKWGSGGWQSSCCTTTISCHPLPQLPNKRHSRVGGRKMSSGVFAKLLSRLAAAGHDLSVPLDLKDYWARHGTNRYITIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21240	BBR_BPC	BPC4, BBR/BPC4,...	basic pentacysteine 4 (.1.2)		Lus10031078 [exp]	0	1
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Lus10037655 [exp]	1.4	0.9194
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Lus10015637 [exp]	2.4	0.9016
AT1G05205			unknown protein		Lus10027173 [exp]	2.8	0.8903
AT1G50660			unknown protein		Lus10043111 [exp]	3.9	0.8880
AT4G30220		RUXF	small nuclear ribonucleoprotei...		Lus10037606 [exp]	3.9	0.8914
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10004455 [exp]	4.9	0.8847
AT2G47640			Small nuclear ribonucleoprotei...		Lus10007876 [exp]	5.7	0.8648
AT3G08880			unknown protein		Lus10012504 [exp]	6.5	0.8413
AT2G30260		U2B''	U2 small nuclear ribonucleopro...		Lus10026413 [exp]	7.1	0.8344
AT3G07590			Small nuclear ribonucleoprotei...		Lus10016068 [exp]	7.9	0.8580

Compare expression of checked genes

Lus10031078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.