Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34710 994 / 0 SPE2, ADC2, ATADC2 arginine decarboxylase 2 (.1.2) AT2G16500 958 / 0 SPE1, ARGDC1, ADC1 arginine decarboxylase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035464 [exp] 740 / 0 AT4G34710 571 / 0.0 arginine decarboxylase 2 (.1.2) Lus10035463 [exp] 0 / 1 AT4G34710 167 / 4e-84 arginine decarboxylase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G163300 [exp] 1036 / 0 AT4G34710 988 / 0.0 arginine decarboxylase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF02784 [flax] [poplar] Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal binding domain CL0036 [flax] [poplar] PF00278 [flax] [poplar] Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C-terminal sheet domain
Representative CDS sequence Show only first row Show all	>Lus10031079 pacid=23166796 polypeptide=Lus10031079 locus=Lus10031079.g ID=Lus10031079.BGIv1.0 annot-version=v1.0 ATGCCTGCCTTAGCGTGTTGCGTAGACTCAGCTGTTATGCCGCCTCCTGGCTACGGTTTCTCCGCTGGGGATAACAACAGCACCCTTCCATCGCAGGTCC CCTTTTCCGGCCTCCCTCACTCTCCAACCTCTGCCGAAGCCACCAATTGGTCGCCGTCCCTCTCCTCTGCTCTTTACCACGTCGATGGCTGGGGCGCTCC GTACTTCGCCGTGAACTCCTCCGGCAACATCGCTGTCCGTCCTCACGGCGGCGACACTCTGCCCCACCAGGAAATCGATCTGGTGAAGATAATAAAGAAG GTTTCTGATCCGAAATCCAACGGAGGGCTGGGGATGCAGCTGCCTCTAATCATCCGCTTCCCTGACGTGCTGAAGAACCGCCTCGAGTCTCTTCAGTCAG CTTTCGAGCTCGCCGTCCAATCCCAGGGCTACGATTCCCATTACCAGGGTGTCTACCCGGTGAAATGCAACCAAGACCGGTTCGTCGTGGAGGACATTGT GAAATTCGGTTCATCTTTCCGGTTCGGGTTGGAAGCTGGGTCAAAACCAGAGCTCCTCCTCGCCATGAGCTGTCTCTGCAGAGGAAGCCAAGATGCTTTC CTGGTTTGCAACGGGTTCAAAGATGCAGAGTACATTTCCTTAGCCTTGCTAGCTAGGAAGCTTGCCTTGAACACCGTGATTGTTCTCGAGCAGGAAGAGG AGCTTGATTTGGTGATTGAATTGAGCCGGAAGCTGTCTATCAGGCCGGTTATCGGCGTCCGAGCCAAGCTGAGGACCAAGCATTCGGGCCATTTTGGTTC TACTTCAGGGGAGAAGGGGAAATTCGGGCTGACCACAACTCAGATTCTCAGCGTGGTGAGGAAGCTTGCAGATTCCGGAATGCTCGATTGCTTCCAGCTT TTGCATTTCCACATCGGATCGCAGATCCCTTCCACCGAGCTCTTAGCAAATGGGGTCGGTGAAGCTGCGCAGATCTACTGCGAATTGGTCCGTCTAGGTG CCAACATGCAGGTCCTCGACATTGGGGGCGGATTAGGGATCGACTATGACGGTTCGAAATCGGGAGACTCTGATCTTTCAGTTGCGTACGGACTTCGAGA GTATGCTCTAGCTGTCGTCCAGGCAGTGAAGTTCGTCTGTGATCGGAAGAGCGTCAAGCATCCAATTCTCTGCAGCGAAAGCGGCAGGGCTATTGTATCT CATCATTCGGTGCTGATTTTCGAAGCTGTTTCGTCATCTGTGTCCAAGGCTGCCACAATGACTCCATTGGCGCTGCAGTACTTTGTGGATGGGCTCACTG AAGAAGCTCGCTCTGATTACCGAAACTTGACTGGTGCTGCGATGAGAGGTGAATATGATACCTGCTTGGTCTATGCTGAACAAATGAAACAGAGGTGTGT TGATCTGTTTAGAGATGGTACTATTGGGATGGAACATTTGGCTGCTGTTGATGCTCTGTGTGAATTCGTTGGTAAAGCCATTGGTGTTGCTGAGCCAGTC AGTACTTATCATGTGAACCTCTCTGTTTTCACATCTATCCCCGATTTCTGGGGGATTCAGCAGCTATTCCCGATAATGCCGATCCATAGGCTGGATGAGA GGCCTGAGGTGAGAGGGATACTCTCTGATTTGACCTGCGATAGTGATGGCAAGATCGATAAGTTCATCGGTGGTGAATCGAGCTTGCCACTTCACGAGAT TGGCGGTGGCCGAGGAAGTGGACCGTACTACTTGGGGATGTTCTTGGGTGGGGCGTATGAGGAGGCACTTGGAGGAGTGCACAACCTGTTCGGTGGTCCT AGTGTTGTGAGGGTTTCGCAGAGCGATGGCCCTCATAGCTTTGCTGTGACTAGAGCTGTTCCTGGGCCGTCGTGCAGTGATGTCCTCCGGGTAATGCAGC ATGAGCCCGAGCTTATGTTCGAGACCCTCAAGCACCGTGCAGAAGAGACGATCTACGACGACGGAGAGAGCGAGATTGCTAGCAGGCTTGCCAGGTCGTT CAGCAACATGCCTTACCTGGATGCTGGTATGGGTGCGTCGTCGTGCTCGTTGACTGCTGCTATGGTGGAGAATGGTGGTGGGTTTTACTACTGCAGTGTG GATGATGGTGATTCGGCAGCGGCGGTGGCTGGTGGAGAGGATGAGCAGCAGTGGAGCTATATCTGTGCTTGA
AA sequence Show only first row Show all	>Lus10031079 pacid=23166796 polypeptide=Lus10031079 locus=Lus10031079.g ID=Lus10031079.BGIv1.0 annot-version=v1.0 MPALACCVDSAVMPPPGYGFSAGDNNSTLPSQVPFSGLPHSPTSAEATNWSPSLSSALYHVDGWGAPYFAVNSSGNIAVRPHGGDTLPHQEIDLVKIIKK VSDPKSNGGLGMQLPLIIRFPDVLKNRLESLQSAFELAVQSQGYDSHYQGVYPVKCNQDRFVVEDIVKFGSSFRFGLEAGSKPELLLAMSCLCRGSQDAF LVCNGFKDAEYISLALLARKLALNTVIVLEQEEELDLVIELSRKLSIRPVIGVRAKLRTKHSGHFGSTSGEKGKFGLTTTQILSVVRKLADSGMLDCFQL LHFHIGSQIPSTELLANGVGEAAQIYCELVRLGANMQVLDIGGGLGIDYDGSKSGDSDLSVAYGLREYALAVVQAVKFVCDRKSVKHPILCSESGRAIVS HHSVLIFEAVSSSVSKAATMTPLALQYFVDGLTEEARSDYRNLTGAAMRGEYDTCLVYAEQMKQRCVDLFRDGTIGMEHLAAVDALCEFVGKAIGVAEPV STYHVNLSVFTSIPDFWGIQQLFPIMPIHRLDERPEVRGILSDLTCDSDGKIDKFIGGESSLPLHEIGGGRGSGPYYLGMFLGGAYEEALGGVHNLFGGP SVVRVSQSDGPHSFAVTRAVPGPSCSDVLRVMQHEPELMFETLKHRAEETIYDDGESEIASRLARSFSNMPYLDAGMGASSCSLTAAMVENGGGFYYCSV DDGDSAAAVAGGEDEQQWSYICA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Lus10031079 [exp]	0	1
AT1G27450		APRT, ATAPT1, A...	ARABIDOPSIS THALIANA ADENINE P...		Lus10018695 [exp]	2.6	0.9729
AT1G50480		THFS	10-formyltetrahydrofolate synt...		Lus10013741 [exp]	3.9	0.9714
AT4G15093			catalytic LigB subunit of arom...		Lus10034361 [exp]	5.5	0.9726
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040765 [exp]	6.5	0.9650
AT2G41380			S-adenosyl-L-methionine-depend...		Lus10001155 [exp]	7.1	0.9663
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10025493 [exp]	7.2	0.9680
AT1G07160			Protein phosphatase 2C family ...		Lus10041072 [exp]	9.5	0.9633
AT3G26310		CYP71B35	"cytochrome P450, family 71, s...		Lus10024518 [exp]	9.5	0.9579
AT3G52880		ATMDAR1	monodehydroascorbate reductase...		Lus10035593 [exp]	11.7	0.9624
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10006742 [exp]	12.7	0.9487

Compare expression of checked genes

Lus10031079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.