Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30700 237 / 4e-74 FAD-binding Berberine family protein (.1) AT1G11770 235 / 2e-73 FAD-binding Berberine family protein (.1) AT1G26400 226 / 1e-69 FAD-binding Berberine family protein (.1) AT4G20840 224 / 4e-69 FAD-binding Berberine family protein (.1) AT2G34810 220 / 2e-67 FAD-binding Berberine family protein (.1) AT1G26420 218 / 1e-66 FAD-binding Berberine family protein (.1) AT1G01980 216 / 1e-65 ATSEC1A FAD-binding Berberine family protein (.1) AT1G26410 214 / 6e-65 FAD-binding Berberine family protein (.1) AT1G26390 213 / 1e-64 FAD-binding Berberine family protein (.1) AT1G26380 213 / 1e-64 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035466 [exp] 420 / 2e-145 AT1G30700 585 / 0.0 FAD-binding Berberine family protein (.1) Lus10009009 [exp] 271 / 5e-87 AT1G30700 534 / 0.0 FAD-binding Berberine family protein (.1) Lus10023375 [exp] 256 / 4e-81 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 244 / 9e-77 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10023365 [exp] 232 / 4e-72 AT1G11770 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10018119 [exp] 224 / 6e-69 AT2G34790 641 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10036147 [exp] 224 / 1e-68 AT2G34790 626 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10023374 [exp] 221 / 6e-68 AT1G26380 500 / 5e-174 FAD-binding Berberine family protein (.1) Lus10038437 [exp] 219 / 6e-67 AT1G26380 484 / 2e-167 FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G158300 [exp] 308 / 1e-101 AT1G30700 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459500 [exp] 253 / 5e-80 AT4G20800 559 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G155900 [exp] 251 / 2e-79 AT4G20800 617 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462600 [exp] 244 / 1e-76 AT1G01980 658 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459100 [exp] 241 / 1e-75 AT4G20800 623 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158400 [exp] 240 / 3e-75 AT1G34575 649 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G470100 [exp] 238 / 2e-74 AT1G30700 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462200 [exp] 234 / 8e-73 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459200 [exp] 231 / 1e-71 AT4G20800 606 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G159600 [exp] 228 / 1e-70 AT1G30760 642 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10031080 pacid=23166810 polypeptide=Lus10031080 locus=Lus10031080.g ID=Lus10031080.BGIv1.0 annot-version=v1.0 ATGCCTACATCCACAACCTCCGCTTCACCACCCCATCAACCCCAAAGCCCTTCCTCATCCTCACCGCATCCCACCATTCCCACGTCCGTGCAGCCGTCCT CGCCGCCGCCCCCCACACCCACGTCCCCATCAAGAACGGGGGCGGCGCGCGCCCCCCCCCACGTAGACAACAGAAACACCGCCAGCGGCGGCCACGACTA CGAAGGCAGATCCTATACCTCCGATCACTCTCCTTTCTTCATCCTCGACATGTGCAACCTCCGCTCCATCCACGTCGACATCCAATCACAGACTGCATGG GTCGAATGCGGAGCCACACTTGGAGAGTTCTTCCATGCCATTGCAGGGAAGAGCCCCACCCACGCCTTCCCTGCAGGTGTATGCCCCACCGTCGGCGTCG GCAGACACGGCGGATACGGTAACCTCATGAGGAAGTACGGGCTATCCATCGACCACATCGTCGACGCGAAAGGTAATGTTCTAAATAGAGAATCCATGAG AGAGGATCTCTTCTGGGCCATACGTGGCGGCGGCGCAACCTTCGGAGTTTTCCTGTCCTACAAGGTCAACTTGGTCAACGTCCCCGAGGTGGTAACCGTT TTCCGAATCTGGAGAACGTTGGAGGATAACGCTACTGAGATGGTTTACACGTGGCAGAAGGTGGCCCCCACTGCTAGCGTGGATCTCTTCATCAGGCTGG TGTTGGATGTTGTAACTACTAGTGTAAAAAAACACAAGACGGCTCGTGCGACGTTCATCGGGATGTTCCTCGGGAGATCGGTGAGGCTAATGTCGATCAT GAGGGAGAAATTTCTGGAGGTCGGATTAACGGCGTCGGATTGTGTGGAGATGAGCTGGATCAACACGGTGGCGTTTTGGGCGGACAAGTCTGAGGTGACC AAGACACGTACGGAGATGGAGGAAGTGATGTGGTCGGGTAGTCGAGAAGGTCGACGAGACCCGACAACCTGA
AA sequence Show only first row Show all	>Lus10031080 pacid=23166810 polypeptide=Lus10031080 locus=Lus10031080.g ID=Lus10031080.BGIv1.0 annot-version=v1.0 MPTSTTSASPPHQPQSPSSSSPHPTIPTSVQPSSPPPPTPTSPSRTGAARAPPHVDNRNTASGGHDYEGRSYTSDHSPFFILDMCNLRSIHVDIQSQTAW VECGATLGEFFHAIAGKSPTHAFPAGVCPTVGVGRHGGYGNLMRKYGLSIDHIVDAKGNVLNRESMREDLFWAIRGGGATFGVFLSYKVNLVNVPEVVTV FRIWRTLEDNATEMVYTWQKVAPTASVDLFIRLVLDVVTTSVKKHKTARATFIGMFLGRSVRLMSIMREKFLEVGLTASDCVEMSWINTVAFWADKSEVT KTRTEMEEVMWSGSREGRRDPTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30700			FAD-binding Berberine family p...		Lus10031080 [exp]	0	1
AT5G02910			F-box/RNI-like superfamily pro...		Lus10000727 [exp]	2.6	1.0000
					Lus10004437 [exp]	3.7	1.0000
AT2G24370			Protein kinase protein with ad...		Lus10027593 [exp]	4.6	1.0000
AT3G18170			Glycosyltransferase family 61 ...		Lus10032454 [exp]	5.3	1.0000
					Lus10021739 [exp]	5.9	1.0000
					Lus10039674 [exp]	6.5	1.0000
AT3G08030			Protein of unknown function, D...		Lus10029502 [exp]	7.0	1.0000
AT2G26490			Transducin/WD40 repeat-like su...		Lus10032868 [exp]	8.0	1.0000
AT1G30920			F-box family protein (.1)		Lus10006734 [exp]	8.5	0.9819
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10038312 [exp]	9.2	0.9415

Compare expression of checked genes

Lus10031080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.