Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14040 182 / 8e-53 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03260 164 / 3e-46 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03240 162 / 2e-45 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G26730 139 / 3e-37 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G35350 137 / 2e-36 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03250 132 / 7e-35 EXS (ERD1/XPR1/SYG1) family protein (.1) AT4G25350 122 / 1e-31 SHB1 SHORT HYPOCOTYL UNDER BLUE1, EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G29060 117 / 8e-30 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G69480 107 / 4e-26 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G68740 62 / 9e-11 PHO1;H1 EXS (ERD1/XPR1/SYG1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036779 [exp] 242 / 1e-74 AT1G14040 1080 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10037147 [exp] 236 / 2e-72 AT1G14040 1071 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030439 [exp] 233 / 2e-71 AT1G14040 1127 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10026623 [exp] 223 / 2e-67 AT1G14040 1058 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030440 [exp] 219 / 3e-66 AT1G14040 1048 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036782 [exp] 203 / 1e-63 AT1G14040 322 / 4e-103 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030438 [exp] 192 / 3e-56 AT1G14040 976 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10035467 [exp] 126 / 5e-37 AT1G14040 111 / 6e-30 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10037146 [exp] 121 / 3e-32 AT4G25350 369 / 2e-121 SHORT HYPOCOTYL UNDER BLUE1, EXS (ERD1/XPR1/SYG1) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G090400 [exp] 205 / 5e-61 AT1G14040 1037 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165800 [exp] 200 / 3e-59 AT1G14040 1032 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165300 [exp] 195 / 2e-57 AT1G14040 1022 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G164900 [exp] 195 / 2e-57 AT1G14040 992 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.017G086800 [exp] 167 / 2e-47 AT3G29060 853 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.016G032900 [exp] 153 / 3e-42 AT1G14040 865 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G090300 [exp] 124 / 4e-32 AT1G69480 831 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165400 [exp] 86 / 5e-20 AT1G69480 115 / 2e-29 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G169400 [exp] 66 / 6e-12 AT3G23430 1019 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.010G165001 [exp] 61 / 1e-11 AT1G69480 87 / 6e-21 EXS (ERD1/XPR1/SYG1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [flax] [poplar] SPX SPX domain CL0182 [flax] [poplar] IT PF03124 [flax] [poplar] EXS EXS family
Representative CDS sequence Show only first row Show all	>Lus10031081 pacid=23166698 polypeptide=Lus10031081 locus=Lus10031081.g ID=Lus10031081.BGIv1.0 annot-version=v1.0 ATGAAGTTTGGGAAGGAATTCACATTACAGATGGTTCCAGAATGGCAACAAGCGTATATGGATTACGATTTCCTCGAGATCCTTTTGAAAGATATAAAAA GGTTCAGGGAAAGAACCAAACCTACAGCTCAGCAATCACTAGCTGGCGGGTTGAAGATGAAGAAGGGGCTTAGTTTCTACAGAGCTCTCAGTGGCTTGAC CCAGAAGAAAAACCCTTGTAATAACTTCGACATTGAGAACCAGCAGGAGGTTCTGGTTACTTCCTCTGTGAACCAGCATAACGGGTCACAGAGGTACCAG ACAACCTTCTTGATGGCCTCGTATGAAGGTGGAGAGTTTGAGCTTGTTTACTTCAGGAAGCTGGATGATGAGTTCAATAAAGTGAACGGCTTCTACAAGT CCAAGGTTAGTGAGGTTTTGAAAGAAGCTGATAGTTTGAAAAAGCAAATGGATACTTTGATTGCGTTTAGAATTAAGGTTGAGAGCCCCACTGGTTGGTC TCGTTTCAATAGGGAAGAACACATCACGCGACTGGCTTCCGATGTTGCAGCTTCTGCTGCTGCATTGGATGCTACCATCCCTTCTCGAGTCAAAGCTGGC AATAAGTTTATGCCTTCGATCTCCATGCAGCGAAAGACAGTGCTGAACTATAACTTCACTTTCTTGCTGCACAAGCAAACTGTGGTTGTGGTTGCTGCAA GCCTAGAGATCATTCGCCGCGGCATCTGGAACTTCTTTAGGTTAGAGAATAGCATGTTAACAATGTAG
AA sequence Show only first row Show all	>Lus10031081 pacid=23166698 polypeptide=Lus10031081 locus=Lus10031081.g ID=Lus10031081.BGIv1.0 annot-version=v1.0 MKFGKEFTLQMVPEWQQAYMDYDFLEILLKDIKRFRERTKPTAQQSLAGGLKMKKGLSFYRALSGLTQKKNPCNNFDIENQQEVLVTSSVNQHNGSQRYQ TTFLMASYEGGEFELVYFRKLDDEFNKVNGFYKSKVSEVLKEADSLKKQMDTLIAFRIKVESPTGWSRFNREEHITRLASDVAASAAALDATIPSRVKAG NKFMPSISMQRKTVLNYNFTFLLHKQTVVVVAASLEIIRRGIWNFFRLENSMLTM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10031081 [exp]	0	1
					Lus10008789 [exp]	5.6	1.0000
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10014217 [exp]	7.7	1.0000
AT5G24070			Peroxidase superfamily protein...		Lus10027049 [exp]	7.9	1.0000
AT5G14760		AO	L-aspartate oxidase (.1)		Lus10018901 [exp]	12.2	1.0000
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10027891 [exp]	12.5	1.0000
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10036470 [exp]	13.6	1.0000
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10020731 [exp]	15.0	1.0000
					Lus10020402 [exp]	16.7	1.0000
					Lus10021815 [exp]	17.7	1.0000
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10023340 [exp]	19.2	1.0000

Compare expression of checked genes

Lus10031081 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.