Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025503 [exp] 276 / 3e-87 ND / Lus10035468 [exp] 256 / 7e-84 ND / Lus10024934 [exp] 253 / 2e-78 ND / Lus10020249 [exp] 248 / 1e-76 ND / Lus10035469 [exp] 147 / 1e-41 AT4G34700 176 / 2e-57 B22 subunit of eukaryotic mitochondrial Complex I, LYR family of Fe/S cluster biogenesis protein (.1) Lus10016109 [exp] 146 / 3e-38 ND / Lus10002735 [exp] 142 / 2e-36 ND / Lus10026716 [exp] 124 / 1e-31 ND / Lus10029184 [exp] 82 / 3e-16 AT1G24020 84 / 1e-18 MLP-like protein 423 (.1.2)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0066 [flax] [poplar] Trefoil PF07468 [flax] [poplar] Agglutinin Agglutinin domain
Representative CDS sequence Show only first row Show all	>Lus10031082 pacid=23166869 polypeptide=Lus10031082 locus=Lus10031082.g ID=Lus10031082.BGIv1.0 annot-version=v1.0 ATGGCATTAGCAGGGTTGCCATTGCCAAGGTTTGTGGTGTTCGAATCTAAGACCGCTAACAGCAACTGCGGCAGATACCTGAGGTACATTGCTGAGCAAG GCGAGCTCAATGATGTCGTCTCCTGCGATGGATACAACGCCACAATCCCAAATGCAAAATTTGAGGTGGAACAACCACGGAACTTGGCAGTTATGGACAA ACCTGTGGTGCACATACGGAGTTGCTACAATAACAAGTACCTAAGGGCGGAACAACATCGGTGGATTGTTGCGGCAGCTGACGAGCCAAATGAAGATCAA TGCCAATGGTCATGTACGTTGTTTGAGCCTGTGTTCTCGAGGCACCACCCCAATCTTATTCGGCTGCTTCATGTACAATCGAGACTCTATTTGCATTGTG ACGGTGTTAACGAGTCTGTGTTAATGGTTGATGATGCGAAGGCGGTTAACGATGAAAACGCTGGAGGGTTATTCCAAGTTGTTAACTGGGAGTCGTTAAT TATACTGCCGAAACACGTTGCGTTCAAAGGTGACAACGGGTTGTTCCTCGGGGTTAGCAAGATTGAAGGATTTAGCGATCCGCTTTTGCAGTTTGGAGTC GCCGATGAGAGAGAAGATCGGTCGGTTAGGAACCAGATCGTTTCGAGACCGGATGGTCTTAGCATCCAGATCAAGAACACTTGTAGTGGATCGTTTTGGA AGCGAGATGATTGTAATTGGATATGCCCTTTAGCTGATGCATATCCTGAGAATGGATCATTAGATGCTACGTTCAAGGTGATCAAGATTAAGGACAACAC CATTGCCCTACTCAACCTGGGGAACAACCACTTCTGCAAGAGATACACAGTTGGGAAAGCTACCAGTTGTTTGAGAGCCATGGATCCGACTGTAACCGAA TTTGCTCACTTGGAAGTCACTGACATCGTTGTTGCTTCCAGGAGCATTTACAATATTCAATTCCGTCTTTGGCACGCTAGGATCATCCACGAGAACAAAA CAAAATTAACGTCAAGAATCATGGCCACTGCCGTGGTCATTAACAACACCACAGAACCTAAGAAGAAAGTTTTGAAATTAACGTTCGATGATACGAACAA TAGCACTTGGAAGAACAGCTCGTCCCTGAGACTGGTGGGCAGCCCCAAGGTGAGGATTGAGTCAGACGTTGTCCACATCAGGGACTCGGAGATCGAGGTG TCATCTAGCGAGTTAGGGACTTCATATGCGTGGAATGAAACAACGACGCAGACAGTGAGCGTGACAAGAATTCATAAGGTTGTGGTGTCGCCAATGACTA AGGTGACAGTGAGACTTATCGCGACGATTGGTACTTGTGAAGTCCCATTCTCGTACGTTCAACACGATATTCTTTACACTGGAGAAGATGAAACTTATGT TCAAGATGATGGGTTGTATACAAGAACCAATGCTTATAACTTCGTCTATGAGACATCGGAAGATCCACTAGACTCTAGATAA
AA sequence Show only first row Show all	>Lus10031082 pacid=23166869 polypeptide=Lus10031082 locus=Lus10031082.g ID=Lus10031082.BGIv1.0 annot-version=v1.0 MALAGLPLPRFVVFESKTANSNCGRYLRYIAEQGELNDVVSCDGYNATIPNAKFEVEQPRNLAVMDKPVVHIRSCYNNKYLRAEQHRWIVAAADEPNEDQ CQWSCTLFEPVFSRHHPNLIRLLHVQSRLYLHCDGVNESVLMVDDAKAVNDENAGGLFQVVNWESLIILPKHVAFKGDNGLFLGVSKIEGFSDPLLQFGV ADEREDRSVRNQIVSRPDGLSIQIKNTCSGSFWKRDDCNWICPLADAYPENGSLDATFKVIKIKDNTIALLNLGNNHFCKRYTVGKATSCLRAMDPTVTE FAHLEVTDIVVASRSIYNIQFRLWHARIIHENKTKLTSRIMATAVVINNTTEPKKKVLKLTFDDTNNSTWKNSSSLRLVGSPKVRIESDVVHIRDSEIEV SSSELGTSYAWNETTTQTVSVTRIHKVVVSPMTKVTVRLIATIGTCEVPFSYVQHDILYTGEDETYVQDDGLYTRTNAYNFVYETSEDPLDSR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10031082 [exp]	0	1
AT4G14490	FHA		SMAD/FHA domain-containing pro...		Lus10031083 [exp]	1.7	0.6281
AT2G17280			Phosphoglycerate mutase family...		Lus10032820 [exp]	9.0	0.6078
AT3G05740		RECQI1	RECQ helicase l1 (.1)		Lus10042451 [exp]	15.8	0.6186
AT5G27670		HTA7	histone H2A 7 (.1)		Lus10029899 [exp]	24.8	0.5234
AT1G11390			Protein kinase superfamily pro...		Lus10002591 [exp]	33.5	0.5892
					Lus10024018 [exp]	41.3	0.5046
					Lus10030256 [exp]	62.8	0.4910
					Lus10032489 [exp]	70.7	0.4765
AT1G29395		COR413IM1, COR4...	cold regulated 414 thylakoid m...		Lus10004599 [exp]	92.9	0.4263
AT4G25850		ORP4B	OSBP(oxysterol binding protein...		Lus10019869 [exp]	247.0	0.3884

Compare expression of checked genes

Lus10031082 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.