Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14490 134 / 7e-36 FHA SMAD/FHA domain-containing protein (.1) AT3G02400 113 / 1e-27 FHA SMAD/FHA domain-containing protein (.1) AT5G19280 44 / 0.0001 FHA RAG1, KAPP ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042052 [exp] 205 / 1e-63 AT3G02400 126 / 3e-33 SMAD/FHA domain-containing protein (.1) Lus10018056 [exp] 154 / 6e-44 AT3G02400 155 / 1e-43 SMAD/FHA domain-containing protein (.1) Lus10041216 [exp] 49 / 4e-06 AT5G19280 608 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Lus10010521 [exp] 47 / 1e-05 AT5G19280 614 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Lus10021929 [exp] 47 / 2e-05 AT5G19280 595 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Lus10034062 [exp] 46 / 4e-05 AT5G19280 549 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Lus10008411 [exp] 43 / 0.0002 AT2G21530 149 / 8e-45 SMAD/FHA domain-containing protein (.1) Lus10001966 [exp] 42 / 0.0005 AT2G21530 152 / 4e-46 SMAD/FHA domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G074900 [exp] 197 / 7e-60 AT4G14490 101 / 1e-23 SMAD/FHA domain-containing protein (.1) Potri.010G091500 [exp] 46 / 2e-05 AT5G19280 636 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Potri.008G149700 [exp] 46 / 3e-05 AT5G19280 644 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Potri.009G156700 [exp] 43 / 0.0001 AT2G21530 135 / 4e-40 SMAD/FHA domain-containing protein (.1) Potri.009G156900 [exp] 41 / 0.0005 AT2G21530 146 / 5e-44 SMAD/FHA domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [flax] [poplar] SMAD-FHA PF00498 [flax] [poplar] FHA FHA domain
Representative CDS sequence Show only first row Show all	>Lus10031083 pacid=23166740 polypeptide=Lus10031083 locus=Lus10031083.g ID=Lus10031083.BGIv1.0 annot-version=v1.0 ATGGAGGCGCCGTCGCTGACGCTGGTAATCATGCGCGGACCTCGCCGGGGCGAAACCTTCGAGTTCCATACTGGATCCGCCGTCCGAATTGGCCGAGTCG TCCGGGGAAACACAATCAGCATCAAAGACGAAGGCATTTCTTCCAAACACCTTCTCATCGAATCAGAATCTGGCAAATGGACCGTACGAGACCTAGATTC TTCCAACGGCACCAAGCTCAACTCCGAGAAGATTTCTCCTCATCAGTCGTTCGGCCTTCGTGATGGCGACCAGATCAAGGTCGGGGAGGTCACTTCTATT CTGGTCCAGATCCAAATCAATAACTGGAATCGGCCTCGACAGTTACGGGGCAGAAAGAGGAGGCGAGCCAGTTCGGTTGAAGTGTCGGAATCAACTGAGA AGGTTACGGCGAAGGTGAATGAATCGCAGCTGAGTGTCGAAGTCGAAGCTGTCTTGAATCATCCGAAAAGAGGGAAACCAAAGAGAGCTAAGGTTTCGGA TCAGGACGTGGATCAGCATCAGCCGGCCGTTCGGAGGATTATTACGCGGAGCAAGAAGAATGAACTAGATCGTTCCACTTCTGACTGCGTTGAATTAGGG TTTGAAGCGAAAAGGAAGCTTCCAGCGACGAGAAACAGAAAGATGAATTTACAGGAACCCCCGCCGGAGAACAAGGACACTGGGGAGAAATTAGCTGAAG ATGATACGAAAGAAGGAGATGACAATGAAGCTGCTCCGGAAGAAACGGAGACGATCCAGAAACCCGTTTCAAGTGAATGCACAGGGAAAGAGAGTTGTGG AAAAGCAGAAGAAATGAACCTGGAGAAGATGACTGCTAGAGACTGGTTTGACTACATGGAAATGCAATTCCGTGAACAAACAGTTGTGGCTACTGAGGAG GTGATCGAAGAACTGAGGAAGAGAGCTGATCGAGTTCGAGAGTATATGATCGAGCAGAAGATAAGCAAGGGCATTCATTGCAAATGTAGCGTAGAAGCCA TTGCAAGGTAA
AA sequence Show only first row Show all	>Lus10031083 pacid=23166740 polypeptide=Lus10031083 locus=Lus10031083.g ID=Lus10031083.BGIv1.0 annot-version=v1.0 MEAPSLTLVIMRGPRRGETFEFHTGSAVRIGRVVRGNTISIKDEGISSKHLLIESESGKWTVRDLDSSNGTKLNSEKISPHQSFGLRDGDQIKVGEVTSI LVQIQINNWNRPRQLRGRKRRRASSVEVSESTEKVTAKVNESQLSVEVEAVLNHPKRGKPKRAKVSDQDVDQHQPAVRRIITRSKKNELDRSTSDCVELG FEAKRKLPATRNRKMNLQEPPPENKDTGEKLAEDDTKEGDDNEAAPEETETIQKPVSSECTGKESCGKAEEMNLEKMTARDWFDYMEMQFREQTVVATEE VIEELRKRADRVREYMIEQKISKGIHCKCSVEAIAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14490	FHA		SMAD/FHA domain-containing pro...		Lus10031083 [exp]	0	1
					Lus10031082 [exp]	1.7	0.6281
AT4G24820			26S proteasome, regulatory sub...		Lus10014789 [exp]	13.1	0.6405
AT4G32250			Protein kinase superfamily pro...		Lus10009358 [exp]	14.7	0.5800
					Lus10024018 [exp]	20.1	0.5651
AT4G38960	CO		B-box type zinc finger family ...		Lus10031087 [exp]	20.3	0.5791
AT1G01860		PFC1	PALEFACE 1, Ribosomal RNA aden...		Lus10009319 [exp]	25.3	0.5716
AT1G53750		RPT1A	regulatory particle triple-A 1...		Lus10031243 [exp]	37.4	0.5750
AT1G11390			Protein kinase superfamily pro...		Lus10002591 [exp]	44.4	0.5892
AT1G45000			AAA-type ATPase family protein...		Lus10017972 [exp]	52.6	0.5584
AT5G13560			unknown protein		Lus10040337 [exp]	72.0	0.5524

Compare expression of checked genes

Lus10031083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.