Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38970 674 / 0 FBA2 fructose-bisphosphate aldolase 2 (.1.2) AT2G21330 665 / 0 FBA1 fructose-bisphosphate aldolase 1 (.1.2.3) AT2G01140 607 / 0 PDE345 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) AT4G26530 384 / 3e-132 Aldolase superfamily protein (.1.2) AT2G36460 383 / 5e-132 Aldolase superfamily protein (.1.2) AT3G52930 378 / 4e-130 Aldolase superfamily protein (.1) AT5G03690 369 / 1e-126 Aldolase superfamily protein (.1.2) AT4G26520 367 / 8e-126 Aldolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035473 [exp] 819 / 0 AT4G38970 671 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Lus10007940 [exp] 470 / 1e-166 AT2G01140 507 / 0.0 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Lus10034619 [exp] 429 / 9e-148 AT2G01140 457 / 1e-158 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Lus10032956 [exp] 392 / 2e-135 AT4G26530 635 / 0.0 Aldolase superfamily protein (.1.2) Lus10014373 [exp] 390 / 1e-134 AT2G36460 629 / 0.0 Aldolase superfamily protein (.1.2) Lus10023870 [exp] 387 / 1e-133 AT2G36460 630 / 0.0 Aldolase superfamily protein (.1.2) Lus10027717 [exp] 379 / 2e-130 AT3G52930 622 / 0.0 Aldolase superfamily protein (.1) Lus10035571 [exp] 369 / 2e-126 AT5G03690 604 / 0.0 Aldolase superfamily protein (.1.2) Lus10035247 [exp] 350 / 2e-119 AT2G01140 466 / 3e-165 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G162400 [exp] 700 / 0 AT4G38970 704 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Potri.009G124100 [exp] 699 / 0 AT4G38970 703 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Potri.007G015500 [exp] 694 / 0 AT4G38970 703 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Potri.008G125900 [exp] 620 / 0 AT2G01140 700 / 0.0 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Potri.010G117900 [exp] 614 / 0 AT2G01140 697 / 0.0 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Potri.001G468100 [exp] 397 / 1e-137 AT4G26530 629 / 0.0 Aldolase superfamily protein (.1.2) Potri.011G165000 [exp] 391 / 3e-135 AT4G26530 628 / 0.0 Aldolase superfamily protein (.1.2) Potri.018G090100 [exp] 388 / 4e-134 AT3G52930 620 / 0.0 Aldolase superfamily protein (.1) Potri.006G165700 [exp] 365 / 4e-125 AT2G36460 634 / 0.0 Aldolase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [flax] [poplar] Peptidase_MH PF00274 [flax] [poplar] Glycolytic Fructose-bisphosphate aldolase class-I
Representative CDS sequence Show only first row Show all	>Lus10031088 pacid=23166868 polypeptide=Lus10031088 locus=Lus10031088.g ID=Lus10031088.BGIv1.0 annot-version=v1.0 ATGGCATCTGCTTCACTTCTAAAGTCATCCCCAGTTGTTGACCTCAAAGGTCAGAGCCTCCGTCAGTCTTCCATCCTCCGCTGCAAATCTTCCTCCACCG CCAAGTTCTCCGTCCGCGCCGCCGGCTCCTACGCCGATGAGCTTGTCAAGACTGCGAAAACAATAGCATCACCAGGGAAAGGAATCATGGCAATGGACGA GTCGAACGCCACGTGCGGGAAAAGACTGGCTTCCATCGGGCTAGAGAACACCGAGGCTAACCGACAGGCCTACAGGACGCTTCTGGTTTCAGCTCCTGGT CTTGGCAAGTACATCTCAGGTGCTATTCTGTTCGAGGAAACTCTGTACCAGTCCACTGTTGATGGCAAGAAGATTGTCGATGTTCTCAAGGAACAAAACA TCGTCCCTGGTATCAAGACCGACAAGGGTTTGGTGCCACTAGCCGGTTCGAACAACGAGTCGTGGTGCCAGGGTCTTGATGGGCTCGCTTCTCGCTCTGC TGCTTACTACGAGGCGGGTGCTCGATTCGCTAAATGGCGTACCGTGGTGAGCATTCCCAACGGCCCATCAGCTCTAGCAGTGAAGGAAGCCGCATGGGGT TTGGCACGCTATGCAGCCATTTCTCAGGACAATGGGTTGGTCCCAATTGTGGAGCCAGAGATCCTGTTGGATGGTGAGCATGGCATAGACAGGACATTTG AAGTTGCTCAGGCAGTGTGGGCAGAAGTCTTCTTCTACTTGGCTCAGAACAATGTCCTGTTTGAAGGCATTCTGCTCAAACCCAGCATGGTCACCCCCGG TGCCGAGTGCAAAGAGAGAGCCACCCCTCAACAGGTTGCCGAGTACACTCTCAATCTCCTCAAGAGAAGAATCCCCCCATCTGTCCCTGGAATCATGGCA AGTCTTTTACTTTTTAACTCGAGAATCAATTTATTCTTGTCTGGTGGGCAATCAGAGGTGGAAGCAACACTGAACCTGAACGCAATGAACCAAAGTCCGA ACCCATGGCACGTGTCGTTCTCGTACGCGAGAGCGCTCCAAAACACTTGCTTGAAGACATGGGGAGGGCTCCCTGAGAACGTGCAGGCTGCTCAGGAGGC TCTGCTCATCCGAGCCAACGCAAACTCGCTGGCTCAGCTTGGGAAATACACCGGAGAAGGCGAGTCTGAGGAGGCCAAGAAAGGCATGTTCGTCAAGGGC TACACCTACTAA
AA sequence Show only first row Show all	>Lus10031088 pacid=23166868 polypeptide=Lus10031088 locus=Lus10031088.g ID=Lus10031088.BGIv1.0 annot-version=v1.0 MASASLLKSSPVVDLKGQSLRQSSILRCKSSSTAKFSVRAAGSYADELVKTAKTIASPGKGIMAMDESNATCGKRLASIGLENTEANRQAYRTLLVSAPG LGKYISGAILFEETLYQSTVDGKKIVDVLKEQNIVPGIKTDKGLVPLAGSNNESWCQGLDGLASRSAAYYEAGARFAKWRTVVSIPNGPSALAVKEAAWG LARYAAISQDNGLVPIVEPEILLDGEHGIDRTFEVAQAVWAEVFFYLAQNNVLFEGILLKPSMVTPGAECKERATPQQVAEYTLNLLKRRIPPSVPGIMA SLLLFNSRINLFLSGGQSEVEATLNLNAMNQSPNPWHVSFSYARALQNTCLKTWGGLPENVQAAQEALLIRANANSLAQLGKYTGEGESEEAKKGMFVKG YTY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38970		FBA2	fructose-bisphosphate aldolase...		Lus10031088 [exp]	0	1
AT4G38970		FBA2	fructose-bisphosphate aldolase...		Lus10035473 [exp]	1.0	0.9875
AT1G42970		GAPB	glyceraldehyde-3-phosphate deh...		Lus10016033 [exp]	2.4	0.9592
AT1G05140			Peptidase M50 family protein (...		Lus10035276 [exp]	4.2	0.9011
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025415 [exp]	5.3	0.9405
AT1G55480		ZKT	protein containing PDZ domain,...		Lus10010322 [exp]	5.7	0.9494
AT4G33860			Glycosyl hydrolase family 10 p...		Lus10033786 [exp]	8.0	0.9051
AT5G38420			Ribulose bisphosphate carboxyl...		Lus10009172 [exp]	8.7	0.9341
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10004708 [exp]	9.2	0.9027
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10041656 [exp]	9.2	0.8998
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10040275 [exp]	9.4	0.9079

Compare expression of checked genes

Lus10031088 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.