Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38980 52 / 1e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035474 [exp] 525 / 0 AT4G38980 59 / 1e-09 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G124000 [exp] 94 / 3e-22 AT4G38980 60 / 2e-10 unknown protein Potri.004G162300 [exp] 71 / 4e-14 AT4G38980 46 / 6e-06 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031089 pacid=23166759 polypeptide=Lus10031089 locus=Lus10031089.g ID=Lus10031089.BGIv1.0 annot-version=v1.0 ATGGCTGACTCCGAGGATATAGGAGAAGAAGGCTCTATTTCTTCACTTCGCGAGTTGTTGGAGTCTAGTCAGAATGTAGATTCTATCTCCACTGAAGACG TTGCCTGGGCCGATTCGTGCCTGGTTAAAGATCCCGACATTTCAAGTGGGGAGTGGAGCTTTGTCAAAGATTCTTTACTTGAGATGTTTAGTCTGTTACC TGAAGCACGCGACTCGTCTGCTGGAGCCACTATGGATCATAGCCTTCTCACCGAGGAGACTGATGTCGAGATGCTCTCTCCTGATGAACCGGCACTCGAT GAAGAACAGCCGCCTTCAGGGTCTTCAAGGGGTAACAACGGTGGTTATCGCATGACAATTGGTAGTGAAACAGAAGGGAACATTGATCTATCTATTCTAT CAAAGGAGGAGATGGATGCCCTATCCTTGCTATCGTATCTGGTTCAGGATCCTGAAACTTTTGATGGAGATTGGAACTCTATGAGGGAAGCTGTGGAACG AATACTCTCGTTGCGCCCTCCTGAAACCAATGGCTTACCTAAAGAAAGCAACACTTTAAGACTTCTTCATGAAGATGGTGCTACACAATCTTCTGCAGGA ACCGACACAGATCAAGCTTCAGTAGGCCACGACACAACAACCAATGGGAACGATTTTGAAATTGGAGGAGAAGCTGTCAACCGTAGTGTGTTAAAAGACG GTCATTTACCAGCTGATACCACCTCTGCGAGGCAAGAAGCAGAACAACCACCCGCGACTGATAAGATCTTTAAGCTCTGGGACTTGTGCATTCCAGATGA GGAAGAGGAGGAAGATGTGTTCATAACACAGTTAAACAAGGCTCTTTCAGGCAGTTCAGTTCAATCAACTGGTATCAACAACGATGAAGCTGCATGGAAA GACAATGAAGAAGGTGCACTAGATCACTTGATTAATGGTATTGGAGACTTAACTATACAGCATGATTCTAGCTAA
AA sequence Show only first row Show all	>Lus10031089 pacid=23166759 polypeptide=Lus10031089 locus=Lus10031089.g ID=Lus10031089.BGIv1.0 annot-version=v1.0 MADSEDIGEEGSISSLRELLESSQNVDSISTEDVAWADSCLVKDPDISSGEWSFVKDSLLEMFSLLPEARDSSAGATMDHSLLTEETDVEMLSPDEPALD EEQPPSGSSRGNNGGYRMTIGSETEGNIDLSILSKEEMDALSLLSYLVQDPETFDGDWNSMREAVERILSLRPPETNGLPKESNTLRLLHEDGATQSSAG TDTDQASVGHDTTTNGNDFEIGGEAVNRSVLKDGHLPADTTSARQEAEQPPATDKIFKLWDLCIPDEEEEEDVFITQLNKALSGSSVQSTGINNDEAAWK DNEEGALDHLINGIGDLTIQHDSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38980			unknown protein		Lus10031089 [exp]	0	1
AT2G34900		GTE1, GTE01, IM...	IMBIBITION-INDUCIBLE 1, GLOBAL...		Lus10029774 [exp]	1.7	0.8441
AT1G43190		PTB3	polypyrimidine tract-binding p...		Lus10018871 [exp]	7.1	0.8154
AT1G04190		TPR3	tetratricopeptide repeat 3, Te...		Lus10021905 [exp]	8.1	0.7999
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10032871 [exp]	9.8	0.7918
AT5G57380		VIN3	VERNALIZATION INSENSITIVE 3, F...		Lus10028170 [exp]	11.2	0.7718
AT5G07670			RNI-like superfamily protein (...		Lus10038927 [exp]	11.6	0.8118
AT1G48050		KU80, ATKU80	ARABIDOPSIS THALIANA KU80 HOMO...		Lus10009294 [exp]	15.5	0.7773
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10027615 [exp]	16.3	0.7785
AT5G50840			unknown protein		Lus10040383 [exp]	21.3	0.8088
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10001923 [exp]	22.4	0.8000

Compare expression of checked genes

Lus10031089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.