Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39010 581 / 0 ATGH9B18 glycosyl hydrolase 9B18 (.1) AT4G39000 471 / 6e-165 ATGH9B17 glycosyl hydrolase 9B17 (.1) AT1G70710 454 / 4e-158 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1) AT1G23210 442 / 1e-153 ATGH9B6 glycosyl hydrolase 9B6 (.1) AT4G02290 441 / 1e-152 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT1G02800 436 / 8e-151 ATCEL2 cellulase 2 (.1) AT1G22880 404 / 7e-140 ATCEL5 ,ATGH9B4 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, ARABIDOPSIS THALIANA CELLULASE 5, cellulase 5 (.1.2) AT1G71380 391 / 1e-133 ATCEL3 ,ATGH9B3 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) AT4G23560 335 / 7e-112 ATGH9B15 glycosyl hydrolase 9B15 (.1) AT4G09740 333 / 7e-111 ATGH9B14 glycosyl hydrolase 9B14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042071 [exp] 605 / 0 AT4G39010 717 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10018077 [exp] 601 / 0 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10029071 [exp] 451 / 7e-157 AT1G70710 827 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10008208 [exp] 443 / 1e-153 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10034199 [exp] 430 / 1e-148 AT1G70710 758 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10038223 [exp] 409 / 4e-140 AT4G02290 706 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10001666 [exp] 404 / 2e-138 AT1G02800 600 / 0.0 cellulase 2 (.1) Lus10027205 [exp] 402 / 1e-137 AT1G70710 584 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10027201 [exp] 381 / 6e-129 AT1G23210 560 / 0.0 glycosyl hydrolase 9B6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G162200 [exp] 671 / 0 AT4G39010 703 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.009G123900 [exp] 665 / 0 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.010G109200 [exp] 464 / 4e-162 AT1G70710 829 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.008G132700 [exp] 453 / 1e-157 AT1G70710 808 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.002G202400 [exp] 447 / 5e-155 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.014G126900 [exp] 441 / 8e-153 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.001G083200 [exp] 434 / 4e-150 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.015G127900 [exp] 412 / 2e-141 AT1G23210 568 / 0.0 glycosyl hydrolase 9B6 (.1) Potri.019G069300 [exp] 405 / 4e-139 AT1G71380 762 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Potri.015G128000 [exp] 405 / 6e-139 AT1G70710 569 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10031090 pacid=23166812 polypeptide=Lus10031090 locus=Lus10031090.g ID=Lus10031090.BGIv1.0 annot-version=v1.0 ATGCCCCCTCAGGAGCTCCGGAACTCGCTCGTCGCCGTCCGGTGGTCCACCGATTACCTCCTCAAGGCCGTCTCCCAGCTCCCCAACCGGATCTTCGTTC AGGTGGGAGATCCGAACGCTGATCACAGCTGCTGGGAAAGACCGGAAGACATGGACACACCAAGGACTGTCTACGCAGTGGACGCACCCAACCCTGCATC CGACGTCGCCGGCGAGACAGCGGCCGCTCTTGCAGCGTCTTCTATCGCCTTCCGGTCGTCGGACCCGGGTTACGCTGAGACATTGCTGAGAAATGCGGTT AGAGCTTTCCAGTTCGCGGATACCTACAGAGGAGCTTATAGTGACAACTCCAATATTAGAGATGGTGCTTGCCCATTTTACTGCGACTTCGATGGCTATC AAGATGAGTTGTTGTGGGGAGCAGCGTGGTTGAGAAGGGCGACGTCGGATGAAATGTACTTGAATTACTTGCAGCAGAATGGGAAAACACTTGGAGCTGA TGAGAATATTAACGAGTTTGGTTGGGATAATAAGCATGCTGGCCTCAATGTTCTCATCTCCAAGGAAGTGCTAGAAGCAAACATGGTGACGCTCGAATCC TACAAAGCATCAGCAGACAGTTTCATGTGCACACTAATCCCAGAATCCTCCTCTTCCCACATCGACTACACCCCTGGCGGCCTAATCTACCGCCCCGGTG GCAGCAACCTTCAACACGCCACCACCATCTCCTTCCTTCTCCTATCCTACGCCAACTACTTGGAACGAACTTCTCAGTCGGTCAGCTGTGGCAGCCTCAA CGTCCCACCTTACAACCTTCGCGCGCAAGCCAAAAGGCAGGTGGACTACATCCTGGGCGACAACCCCCTGGGAATGTCGTACATGGTTGGGTACAGCGAC AGGTATCCGCAGAGGATCCACCACAGGGGTTCCTCGTTGCCATCGGTGAAGGACCATCCATCGGTCATGAGTTGTAAAGAGGGTTCGGTTTATTTCAACT CGTCCGGATCGAACCCTAACGTGCTGGTTGGAGCGATCGTGGGCGGACCGAGCGAGAACGATGATTACCAGGACGACCGGGCAGATTTCAAGAAGTCGGA GCCCACAACGTACATCAATGCCCCGTTTGTGGGCGTGCTAGCGTATTTCGCTGCTAATCCTGGTTTTAGTTGA
AA sequence Show only first row Show all	>Lus10031090 pacid=23166812 polypeptide=Lus10031090 locus=Lus10031090.g ID=Lus10031090.BGIv1.0 annot-version=v1.0 MPPQELRNSLVAVRWSTDYLLKAVSQLPNRIFVQVGDPNADHSCWERPEDMDTPRTVYAVDAPNPASDVAGETAAALAASSIAFRSSDPGYAETLLRNAV RAFQFADTYRGAYSDNSNIRDGACPFYCDFDGYQDELLWGAAWLRRATSDEMYLNYLQQNGKTLGADENINEFGWDNKHAGLNVLISKEVLEANMVTLES YKASADSFMCTLIPESSSSHIDYTPGGLIYRPGGSNLQHATTISFLLLSYANYLERTSQSVSCGSLNVPPYNLRAQAKRQVDYILGDNPLGMSYMVGYSD RYPQRIHHRGSSLPSVKDHPSVMSCKEGSVYFNSSGSNPNVLVGAIVGGPSENDDYQDDRADFKKSEPTTYINAPFVGVLAYFAANPGFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Lus10031090 [exp]	0	1
AT4G38130		ATHDA19, ATHD1,...	ARABIDOPSIS HISTONE DEACETYLAS...		Lus10001356 [exp]	1.0	0.9074
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Lus10031091 [exp]	3.2	0.8477
AT2G21050		LAX2	like AUXIN RESISTANT 2 (.1)		Lus10025057 [exp]	17.3	0.8395
AT3G56370			Leucine-rich repeat protein ki...		Lus10025139 [exp]	18.7	0.8601
AT4G14368			Regulator of chromosome conden...		Lus10030999 [exp]	20.4	0.8568
AT4G02110			transcription coactivators (.1...		Lus10010017 [exp]	20.4	0.8701
AT3G16980		NRPE9A, NRPD9A,...	RNA polymerases M/15 Kd subuni...		Lus10037747 [exp]	29.8	0.8168
AT5G40250			RING/U-box superfamily protein...		Lus10023205 [exp]	32.0	0.8147
AT4G36180			Leucine-rich receptor-like pro...		Lus10042177 [exp]	32.9	0.8598
AT1G80670		RAE1	RNA export factor 1, Transduci...		Lus10026095 [exp]	42.8	0.8133

Compare expression of checked genes

Lus10031090 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.