Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75560 49 / 8e-07 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035477 [exp] 99 / 1e-26 AT1G75560 49 / 2e-08 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2) Lus10041902 [exp] 42 / 0.0003 AT4G36020 159 / 2e-47 cold shock domain protein 1 (.1) Lus10028449 [exp] 41 / 0.0004 AT4G36020 158 / 3e-47 cold shock domain protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G161800 [exp] 87 / 2e-20 AT1G75560 273 / 2e-92 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2) Potri.005G234700 [exp] 67 / 7e-13 AT1G75560 278 / 2e-94 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2) Potri.007G057100 [exp] 41 / 0.0003 AT4G36020 127 / 3e-35 cold shock domain protein 1 (.1) Potri.005G112800 [exp] 41 / 0.0003 AT2G17870 86 / 1e-19 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [flax] [poplar] Retroviral_zf PF00098 [flax] [poplar] zf-CCHC Zinc knuckle
Representative CDS sequence Show only first row Show all	>Lus10031093 pacid=23166773 polypeptide=Lus10031093 locus=Lus10031093.g ID=Lus10031093.BGIv1.0 annot-version=v1.0 ATGAAGGGGGGGCCACCGTTATGGAGCAGGAGCTGCCACCAGTATGGACACATGAGTAGGGACTGCATGGGTGGTGCGTTGATGATCTGCCACAACTGCG GTGGACGTGGACATCGCGCCGTTGAGTGTCCTTCCGGTAGGATGATGGAGCGATATCCGCCACCTGACAAGGATCCAGCTTGCCTAATCGTTAAAAAAGC TTCATATGTCGCTAATCTTTTCAAGTTAATTAAGTGTTATTCGATTGGTGTTATTGCTGAGGGAGAAGAAAGAAATGGTAAAGCGAATGGAGAGAAAGAA GTTGAGTGCAGCGGCTCTAAGGAAAGACTTGGAGTGAGCCCTCTAGAGTTTGTTAACAAAACCCTGGATGGGTTGCCCCCGCCTCCTCCGCCTGCTGGGA ACATGAATGAACAACTCGGGGAAGTGAAAGTAACAATGGTGGCGACGGAGGGGACAAACAGTGGAATAATAGGCAGTCGTCGTTTCAGAGAAATGGAGGA GGGCAAGGAGCATGATGCAAATATTTTCCATGAAAATGAACACTGTAGAATAGTGAAGGAAGCAGTGGCTACTCGTGATGCATTGACGCGGCATGGTGGA CAATTGGTGGATGAATGTGAATGTTGTGCTACGACAGGTGAGACTACGACGCATCTCTTTATGGAGTGTGAACTGGCGCGTGAGTGCCGGCAACTCGAGG GACTCACGGCGTGGATCGAAGGCATCGACGGCTTTGCTGAAGATTTCCGATGA
AA sequence Show only first row Show all	>Lus10031093 pacid=23166773 polypeptide=Lus10031093 locus=Lus10031093.g ID=Lus10031093.BGIv1.0 annot-version=v1.0 MKGGPPLWSRSCHQYGHMSRDCMGGALMICHNCGGRGHRAVECPSGRMMERYPPPDKDPACLIVKKASYVANLFKLIKCYSIGVIAEGEERNGKANGEKE VECSGSKERLGVSPLEFVNKTLDGLPPPPPPAGNMNEQLGEVKVTMVATEGTNSGIIGSRRFREMEEGKEHDANIFHENEHCRIVKEAVATRDALTRHGG QLVDECECCATTGETTTHLFMECELARECRQLEGLTAWIEGIDGFAEDFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75560			zinc knuckle (CCHC-type) famil...		Lus10031093 [exp]	0	1
AT3G52230			unknown protein		Lus10028838 [exp]	1.7	0.9287
AT5G13010		EMB3011	embryo defective 3011, RNA hel...		Lus10000874 [exp]	3.7	0.9146
AT1G11340			S-locus lectin protein kinase ...		Lus10018406 [exp]	4.2	0.9210
AT2G34470		PSKF109, UREG	urease accessory protein G (.1...		Lus10004922 [exp]	8.1	0.9160
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Lus10008958 [exp]	9.4	0.9166
AT2G17650			AMP-dependent synthetase and l...		Lus10028375 [exp]	9.5	0.8965
AT1G03590			Protein phosphatase 2C family ...		Lus10033708 [exp]	11.0	0.9198
AT5G37480			unknown protein		Lus10013637 [exp]	11.8	0.9071
AT1G74790			catalytics (.1)		Lus10033116 [exp]	13.8	0.9166
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Lus10012068 [exp]	16.3	0.8722

Compare expression of checked genes

Lus10031093 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.