Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21650 286 / 2e-87 Subtilase family protein (.1) AT1G32970 281 / 4e-86 Subtilisin-like serine endopeptidase family protein (.1) AT4G10520 271 / 8e-82 Subtilase family protein (.1) AT4G10510 269 / 5e-81 Subtilase family protein (.1) AT1G66210 268 / 9e-81 Subtilisin-like serine endopeptidase family protein (.1) AT1G66220 266 / 5e-80 Subtilase family protein (.1) AT4G21640 264 / 2e-79 Subtilase family protein (.1) AT4G10530 263 / 5e-79 Subtilase family protein (.1) AT4G10540 262 / 2e-78 Subtilase family protein (.1) AT5G11940 261 / 3e-78 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035478 [exp] 815 / 0 AT4G10550 659 / 0.0 Subtilase family protein (.1.2.3) Lus10011537 [exp] 243 / 2e-71 AT5G67360 1117 / 0.0 Subtilase family protein (.1) Lus10019285 [exp] 242 / 5e-71 AT5G67360 1105 / 0.0 Subtilase family protein (.1) Lus10007765 [exp] 238 / 9e-70 AT5G67360 990 / 0.0 Subtilase family protein (.1) Lus10011089 [exp] 236 / 3e-69 AT5G67360 1108 / 0.0 Subtilase family protein (.1) Lus10006505 [exp] 237 / 6e-69 AT2G04160 745 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10007083 [exp] 235 / 2e-68 AT5G45650 956 / 0.0 subtilase family protein (.1) Lus10020458 [exp] 235 / 3e-68 AT5G45650 940 / 0.0 subtilase family protein (.1) Lus10013187 [exp] 233 / 2e-67 AT3G14240 1175 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G161400 [exp] 466 / 1e-156 AT4G10550 659 / 0.0 Subtilase family protein (.1.2.3) Potri.001G450600 [exp] 376 / 8e-122 AT1G32960 772 / 0.0 Subtilase family protein (.1) Potri.011G150900 [exp] 366 / 6e-118 AT1G32960 744 / 0.0 Subtilase family protein (.1) Potri.001G002200 [exp] 281 / 2e-85 AT4G26330 891 / 0.0 UNFERTILIZED EMBRYO SAC 17, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G455800 [exp] 279 / 5e-85 AT4G10550 558 / 0.0 Subtilase family protein (.1.2.3) Potri.011G151200 [exp] 279 / 8e-85 AT1G32960 906 / 0.0 Subtilase family protein (.1) Potri.001G450401 [exp] 275 / 4e-83 AT4G10550 938 / 0.0 Subtilase family protein (.1.2.3) Potri.011G146300 [exp] 265 / 9e-80 AT4G10550 546 / 0.0 Subtilase family protein (.1.2.3) Potri.011G050100 [exp] 249 / 7e-74 AT2G04160 784 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.002G120400 [exp] 246 / 1e-72 AT5G67360 966 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10031097 pacid=23166763 polypeptide=Lus10031097 locus=Lus10031097.g ID=Lus10031097.BGIv1.0 annot-version=v1.0 ATGGAAATCATAATCGCTAATACCGGTATCTGGCCAAACCCGATTAAGTCAAATAGGGTGAAACCCGAGTTGATCGGGTATTTTAAAGGTATGGGAAAAC TTGAGAAAGGTCTGGGAAACCTCGAGAACCATTATGTGCAAGTACAGGTAGGGAAAATCATAGGTGCACGTTGGTATGTCAAAGGGTACGAAGCAGAGTT TGGAAAGATCGACACAAGCGATGGAGTTGAGTACTTATCTCCCAGAGATGCTGGTGGACATGGAACTCACACATCATCAACTGCAGTTGGCTCACCAGTG AGAAATGCAAGTTACATGGGGCTAGCTCAAGGAACAGCAAGAGAAGGAGCTCCATTAGCTTGGCTAGCAATCTACAAGGTATGCTGGGCTACAGGCGGAT GCAGCTCGCCGATATCCTGGCTGGATTTGACGACGCGATTGCTGATGATCATCATTAACACAGCTCTGTGGGTTGTTACTGTTGCTACAAGCTCCATTGA TAGAGCTTTCCCTGTTGGGATCACTCTTGGAAACAACCAAACTGTTGTGGGCCAAGGTTTGTATACAGGGAAGGACATGGATGATTTTCACCCTATTGTT TATGGAGAAAACATTGCAGCTGCTGATTCTGATGCAGATACTGCTAGAAGCTGTGATTCAGGAAGCTTGGATGCTGCTCTACCAAGAGGGAAAGTGATAC TGTGCTTTCAGTCCAGATCACAGAGCTCAGCCACAACTGCCATAACCACAGTTCAAGATGTTGATGCAGTTGGCCTCATCTTCGCCTGGTTACTATACAC CAAGGATGTCTCTTCATGCTATGGAGTCCCATGTGCTCAAGTTGACTTCACCGTTGGGACATCTCTCCTCACTTACATTGCCTCAAACAGTTCAGCTCCA CAAGGACAGCAGACTTCTCAAGAAGTGGCACTCTTTTCGTCGCGAGGACTGAGTTCTCTCCCTCCTGATATTCTGAAGCCTGACATTGCTGGTCCTGGAG TCAACATCCTAGCATCTTGGTCGCCAGCTGGTGCGTTCGATATTCCACTTTATTTCAAGATCGAATCGGGAACTTCCATGTCATGCCTACTTGGAGCCCT GCTGCAATCAACTTCAACACAAGATGTGTATGGTCAAACCACCATAGCAGAAGGAGCTCCTGAGAAGCTGGCTGATCCATTTGACTATGGTAATGGACAT GTTGATCCCAACAAAGCCATAGATCCCGGTCTGGTTTATGACATGGAAGCTTTGGACTACATCAGGTTTCTCTGTGCCATGGCGTACAACAGCTCAGCAA TCAGCAAGATGACCAGGAAGAACAACACACAGACACAATGCCAGAAGAAATCAGTTTCTTCCGCGAATATCCTCGAAAATCTAAACCTTCCATCCATCGC AATTCCTGAGTTGAGGCAGAACTTGACTGTGACAAGAACGGTCACAAATGTTGGTGCAATTGACTCCATCTACATTGCTAGAGTCCATCCTCCAGCTGGG GTCTATGTCACGGTTGAGCCATCGGTTCTGGTGTTCGATTCCGGCACGAAGCGAATCAAGTTCAAGGCTACATTCTGTTCCAAGGTCATGATCCAAGGGA AGTACTCATTTGGACACTTGAGTTGGGAAAATAGTGATGATTGA
AA sequence Show only first row Show all	>Lus10031097 pacid=23166763 polypeptide=Lus10031097 locus=Lus10031097.g ID=Lus10031097.BGIv1.0 annot-version=v1.0 MEIIIANTGIWPNPIKSNRVKPELIGYFKGMGKLEKGLGNLENHYVQVQVGKIIGARWYVKGYEAEFGKIDTSDGVEYLSPRDAGGHGTHTSSTAVGSPV RNASYMGLAQGTAREGAPLAWLAIYKVCWATGGCSSPISWLDLTTRLLMIIINTALWVVTVATSSIDRAFPVGITLGNNQTVVGQGLYTGKDMDDFHPIV YGENIAAADSDADTARSCDSGSLDAALPRGKVILCFQSRSQSSATTAITTVQDVDAVGLIFAWLLYTKDVSSCYGVPCAQVDFTVGTSLLTYIASNSSAP QGQQTSQEVALFSSRGLSSLPPDILKPDIAGPGVNILASWSPAGAFDIPLYFKIESGTSMSCLLGALLQSTSTQDVYGQTTIAEGAPEKLADPFDYGNGH VDPNKAIDPGLVYDMEALDYIRFLCAMAYNSSAISKMTRKNNTQTQCQKKSVSSANILENLNLPSIAIPELRQNLTVTRTVTNVGAIDSIYIARVHPPAG VYVTVEPSVLVFDSGTKRIKFKATFCSKVMIQGKYSFGHLSWENSDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10540			Subtilase family protein (.1)		Lus10031097 [exp]	0	1
AT4G26220			S-adenosyl-L-methionine-depend...		Lus10009484 [exp]	5.0	0.8146
AT1G07745		SSN1, ATRAD51D,...	SUPPRESOR OF SNI1, homolog of ...		Lus10005437 [exp]	10.3	0.8387
AT4G12480		PEARLI 1 1, PEA...	EARLY ARABIDOPSIS ALUMINUM IND...		Lus10036494 [exp]	14.1	0.7654
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Lus10030600 [exp]	14.8	0.8355
AT3G18760			Translation elongation factor...		Lus10038301 [exp]	17.2	0.8178
AT4G37020			unknown protein		Lus10000435 [exp]	21.6	0.8094
AT3G05400			Major facilitator superfamily ...		Lus10029970 [exp]	21.6	0.7923
AT1G13030			sphere organelles protein-rela...		Lus10006465 [exp]	21.9	0.7873
AT5G62980		FOLB2	Dihydroneopterin aldolase (.1)		Lus10021252 [exp]	23.5	0.8104
AT1G51730			Ubiquitin-conjugating enzyme f...		Lus10037613 [exp]	30.6	0.8158

Compare expression of checked genes

Lus10031097 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.