Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64760 665 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G19440 662 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT3G04010 611 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT5G18220 600 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT3G24330 489 / 2e-170 O-Glycosyl hydrolases family 17 protein (.1) AT5G64790 486 / 2e-169 O-Glycosyl hydrolases family 17 protein (.1) AT4G31140 465 / 4e-161 O-Glycosyl hydrolases family 17 protein (.1) AT5G58090 446 / 1e-153 O-Glycosyl hydrolases family 17 protein (.1) AT5G20870 416 / 1e-141 O-Glycosyl hydrolases family 17 protein (.1) AT4G17180 406 / 6e-138 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020261 [exp] 747 / 0 AT1G64760 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10002633 [exp] 743 / 0 AT1G64760 681 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10006811 [exp] 471 / 9e-163 AT5G64790 565 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10001183 [exp] 460 / 1e-158 AT5G20870 628 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10040579 [exp] 457 / 2e-158 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10028104 [exp] 457 / 4e-158 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10043075 [exp] 457 / 1e-157 AT5G20870 631 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10005788 [exp] 467 / 8e-155 AT5G64790 565 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10024535 [exp] 441 / 2e-151 AT4G31140 627 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G032900 [exp] 706 / 0 AT1G64760 698 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.013G059700 [exp] 702 / 0 AT1G64760 701 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.007G078900 [exp] 513 / 4e-180 AT5G64790 528 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G072300 [exp] 504 / 3e-176 AT3G24330 647 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G280700 [exp] 473 / 1e-163 AT4G31140 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G000900 [exp] 467 / 2e-161 AT4G31140 667 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G150400 [exp] 464 / 2e-160 AT5G58090 735 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G080600 [exp] 461 / 2e-159 AT5G58090 739 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G216700 [exp] 439 / 7e-151 AT5G20870 633 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G002100 [exp] 437 / 4e-150 AT4G17180 711 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10031098 pacid=23166845 polypeptide=Lus10031098 locus=Lus10031098.g ID=Lus10031098.BGIv1.0 annot-version=v1.0 ATGGAGGGTTGTAGGTTTTGGTTTCTGCTTCTTGCCATGTTGATCTGTGGAGGAGGTTATTACAGTGTTGTTGATGGACTAGGAGTGAACTGGGGAACCA TGGCTACCCATCAGTTGCCACCCAAGACAGTGGTGGAGATGCTCAAGGCCAATGGGCTTCAGAAGGTGAAGCTTTTCGATGCTGATGCCAGAACCATGAA TGCTCTTGCTGGGAGTAACATCGAGGTCATGGTGGCCATCCCTAATGATCAGCTTCAAGCTATGAATGATAAAGACACTGCACAAGATTGGGTTAAGAGG AATGTCTCTCGTTACACCTTCAATGGAGGTGTTAATATCAAGTATGTGGCAGTCGGAAATGAACCATTCCTCAAGAGCTACAATGGCTCATTCATAAACA CAACATTCCCAGCACTTCAGAACATTCAAAATGCTCTCAACGAAGCCAATCTCGGTGACAGCATTAAAGCAACCGTGCCTATGAATGCTGATGTATACCT TTCCCCTGATGATCAACCATATCCATCTGCTGGACGGTTCAGGCCAGACATCAACGACCTCATGACCCAGATAGTTCAGTTTCTTGACAAGAACAAGGCA CCTTTCACAGTGAACATTTACCCCTTCTTGAGTCTCTACGGGAACGATGACTTCCCTTTCAATTTCGCTTTCTTCGATGGGGTGACACAACCTGTGGTGG ATAAAGGCACTGGCCTTCAGTATACAAATGTCTTCGATGCCAACTTCGACACATTGGTGTCGGCCCTCAAAGCAGCAGGCTATGGGGACATGACCATTAT GGTTGGGGAAGTAGGTTGGCCAACCGATGGAGACAAGAACGGCAATGCTGGTAATGCTTACAGATTCTACAATGGTCTCATGCCAAGGCTGGCATCGAAT AAGGGCACTCCTCTCCGCCCTGGGTACATCGAGATCTACTTGTTTGGTCTCCTTGATGAAGATGCCAAGAGCATTGCACCAGGAAGCTTTGAACGTCACT GGGGGATTTTTCGGTATGATGGGCAGCCCAAGTTTGCACTGGATATTTCAGGGCAGGGACAGAACAAGTTACTTGTGGGTGCACAAGATGTCAATTATCT GTCGAATAAGTGGTGTATGTTTGATGCTTCTGCCCAGGACCTCAGCAAGCTTGCTGATAACATCAACTATGCATGTACGTTCTCCGATTGCACAGCTCTA GGATATGGATCATCCTGCAACGGCTTGGATGGCAATTCGAATGCCTCGTACGCCTTCAATATGTATTACCAGGTGCAGAATCAGGATGACATGGCGTGTA ATTTCGAAGGTCTGGGCACGGTTACTACGCAGAATATATCGCAGGGTAACTGCAACTTCATGATTCAGATAGCTACTTCTTCTTCCTCCTCAATCATTTC CCATTATTCTCTTGTGGGTGCTGGGTTGGCATTTGTGGCGTTATTAGCATCATCCTTTGTTCTAGTATAA
AA sequence Show only first row Show all	>Lus10031098 pacid=23166845 polypeptide=Lus10031098 locus=Lus10031098.g ID=Lus10031098.BGIv1.0 annot-version=v1.0 MEGCRFWFLLLAMLICGGGYYSVVDGLGVNWGTMATHQLPPKTVVEMLKANGLQKVKLFDADARTMNALAGSNIEVMVAIPNDQLQAMNDKDTAQDWVKR NVSRYTFNGGVNIKYVAVGNEPFLKSYNGSFINTTFPALQNIQNALNEANLGDSIKATVPMNADVYLSPDDQPYPSAGRFRPDINDLMTQIVQFLDKNKA PFTVNIYPFLSLYGNDDFPFNFAFFDGVTQPVVDKGTGLQYTNVFDANFDTLVSALKAAGYGDMTIMVGEVGWPTDGDKNGNAGNAYRFYNGLMPRLASN KGTPLRPGYIEIYLFGLLDEDAKSIAPGSFERHWGIFRYDGQPKFALDISGQGQNKLLVGAQDVNYLSNKWCMFDASAQDLSKLADNINYACTFSDCTAL GYGSSCNGLDGNSNASYAFNMYYQVQNQDDMACNFEGLGTVTTQNISQGNCNFMIQIATSSSSSIISHYSLVGAGLAFVALLASSFVLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64760			O-Glycosyl hydrolases family 1...		Lus10031098 [exp]	0	1
AT4G35730			Regulator of Vps4 activity in ...		Lus10041836 [exp]	2.0	0.9616
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Lus10024024 [exp]	3.5	0.9404
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10006853 [exp]	3.9	0.9205
AT4G13370			Plant protein of unknown funct...		Lus10043255 [exp]	4.9	0.9558
					Lus10006225 [exp]	8.2	0.8793
					Lus10030118 [exp]	9.2	0.9350
AT4G13370			Plant protein of unknown funct...		Lus10019398 [exp]	9.9	0.9426
AT1G54610			Protein kinase superfamily pro...		Lus10012805 [exp]	10.5	0.9242
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10025980 [exp]	11.8	0.9206
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10034288 [exp]	13.4	0.8705

Compare expression of checked genes

Lus10031098 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.