Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05300 98 / 4e-25 ZIP5 zinc transporter 5 precursor (.1.2) AT2G32270 97 / 6e-25 ZIP3 zinc transporter 3 precursor (.1) AT2G30080 93 / 3e-23 ATZIP6, ZIP6 ZIP metal ion transporter family (.1) AT1G10970 92 / 2e-22 ATZIP4, ZIP4 zinc transporter 4 precursor (.1) AT1G60960 91 / 2e-22 ATIRT3, IRT3 iron regulated transporter 3 (.1) AT4G33020 90 / 6e-22 ATZIP9, ZIP9 ZIP metal ion transporter family (.1) AT3G12750 88 / 3e-21 ZIP1 zinc transporter 1 precursor (.1) AT4G19690 87 / 6e-21 ATIRT1, IRT1 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) AT2G04032 86 / 1e-20 ZIP7 zinc transporter 7 precursor (.1) AT1G31260 82 / 4e-19 ZIP10 zinc transporter 10 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041647 [exp] 117 / 3e-32 AT3G12750 383 / 2e-132 zinc transporter 1 precursor (.1) Lus10041613 [exp] 115 / 1e-31 AT3G12750 397 / 1e-138 zinc transporter 1 precursor (.1) Lus10024107 [exp] 114 / 3e-31 AT3G12750 394 / 4e-137 zinc transporter 1 precursor (.1) Lus10006935 [exp] 103 / 4e-27 AT3G12750 295 / 2e-98 zinc transporter 1 precursor (.1) Lus10019854 [exp] 91 / 8e-23 AT3G12750 280 / 6e-94 zinc transporter 1 precursor (.1) Lus10031307 [exp] 87 / 4e-22 AT2G30080 264 / 2e-89 ZIP metal ion transporter family (.1) Lus10014062 [exp] 90 / 7e-22 AT3G12750 318 / 3e-107 zinc transporter 1 precursor (.1) Lus10040615 [exp] 82 / 4e-19 AT1G31260 437 / 6e-154 zinc transporter 10 precursor (.1) Lus10014063 [exp] 72 / 2e-15 AT3G12750 262 / 2e-85 zinc transporter 1 precursor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G006800 [exp] 117 / 3e-32 AT1G05300 322 / 6e-109 zinc transporter 5 precursor (.1.2) Potri.006G006600 [exp] 114 / 3e-31 AT1G05300 328 / 2e-111 zinc transporter 5 precursor (.1.2) Potri.001G160400 [exp] 105 / 1e-27 AT3G12750 320 / 5e-108 zinc transporter 1 precursor (.1) Potri.010G134300 [exp] 97 / 1e-24 AT2G04032 402 / 4e-140 zinc transporter 7 precursor (.1) Potri.008G083100 [exp] 97 / 2e-24 AT3G12750 350 / 7e-120 zinc transporter 1 precursor (.1) Potri.010G173300 [exp] 97 / 2e-24 AT3G12750 339 / 2e-115 zinc transporter 1 precursor (.1) Potri.015G117700 [exp] 94 / 1e-23 AT1G31260 436 / 5e-154 zinc transporter 10 precursor (.1) Potri.015G117900 [exp] 92 / 7e-23 AT4G19690 443 / 2e-156 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) Potri.009G074100 [exp] 90 / 3e-22 AT2G30080 360 / 2e-124 ZIP metal ion transporter family (.1) Potri.006G006900 [exp] 87 / 5e-22 AT1G05300 187 / 2e-58 zinc transporter 5 precursor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF02535 [flax] [poplar] Zip ZIP Zinc transporter
Representative CDS sequence Show only first row Show all	>Lus10031099 pacid=23166699 polypeptide=Lus10031099 locus=Lus10031099.g ID=Lus10031099.BGIv1.0 annot-version=v1.0 ATGGCTTTACCACCTAAGACCACGCAGCAATATCACTCTCATGTTGCTGCATTATCTGTTGCCGGAGACAGTTCAGACGAGACTCAACTCGTCCGTCATC AAGTCATCTACCAGGTTTTGAAGTTGGGAATTTTGGTGCACTCGGGAATCATAGGAATTTCATTGGGTGCATCTGGAAATCCCAAAACTATAAGGCCTTT GATTGCTGCCTTGTCGTTTCATCAATGTTTCGAACGGATGGGGACTGGTGGCTGCATTGCCCAGGCCAAATTCAAACCCCAGGTGGTTGCATTAATGGTG TTCTTCTCACTCACAACTCCGGTGGGGATTGCAATTGGGATGGCTTGGCTATATCGACGGCCAGTAAACTCCTCCAACACTGCACTCCTTATCGGGTCAG GTGTAATGTCCATGATAGCCATGTGGGCGTGA
AA sequence Show only first row Show all	>Lus10031099 pacid=23166699 polypeptide=Lus10031099 locus=Lus10031099.g ID=Lus10031099.BGIv1.0 annot-version=v1.0 MALPPKTTQQYHSHVAALSVAGDSSDETQLVRHQVIYQVLKLGILVHSGIIGISLGASGNPKTIRPLIAALSFHQCFERMGTGGCIAQAKFKPQVVALMV FFSLTTPVGIAIGMAWLYRRPVNSSNTALLIGSGVMSMIAMWA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05300		ZIP5	zinc transporter 5 precursor (...		Lus10031099 [exp]	0	1
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10012615 [exp]	4.5	0.8664
					Lus10041636 [exp]	7.4	0.8791
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10005592 [exp]	8.9	0.8122
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10032179 [exp]	10.4	0.8733
AT4G00165			Bifunctional inhibitor/lipid-t...		Lus10015883 [exp]	12.7	0.8685
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10020124 [exp]	13.3	0.7937
AT3G21880	CO	COL12	B-box type zinc finger protein...		Lus10031584 [exp]	16.2	0.8519
AT1G20650		ASG5	ALTERED SEED GERMINATION 5, Pr...		Lus10013222 [exp]	18.3	0.7980
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10000185 [exp]	18.4	0.8277
AT5G06270			unknown protein		Lus10004209 [exp]	19.0	0.8518

Compare expression of checked genes

Lus10031099 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.