Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61580 651 / 0 AtSLD1 sphingoid LCB desaturase 1, Fatty acid/sphingolipid desaturase (.1) AT2G46210 646 / 0 AtSLD2 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) AT1G26340 64 / 2e-12 B5 #6, B5#6, ATCB5-A ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) AT5G53560 64 / 3e-12 B5#2, ATB5-A, ATCB5-E ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) AT5G48810 61 / 4e-11 B5#3, ATB5-B, ATCB5-D ARABIDOPSIS CYTOCHROME B5 ISOFORM D, cytochrome B5 isoform D (.1) AT2G32720 59 / 1e-10 B5 #4, B5#4, ATCB5-B ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) AT1G60660 55 / 3e-09 B5 #5, B5#5, ATCB5LP ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1) AT2G46650 53 / 2e-08 B5 #1, B5#1, ATCB5-C ARABIDOPSIS CYTOCHROME B5 ISOFORM C, cytochrome B5 isoform C (.1) AT1G37130 53 / 3e-07 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) AT5G09680 50 / 6e-07 RLF reduced lateral root formation (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035482 [exp] 895 / 0 AT3G61580 659 / 0.0 sphingoid LCB desaturase 1, Fatty acid/sphingolipid desaturase (.1) Lus10036408 [exp] 653 / 0 AT2G46210 700 / 0.0 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) Lus10041083 [exp] 577 / 0 AT2G46210 595 / 0.0 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) Lus10000651 [exp] 62 / 2e-11 AT1G26340 194 / 7e-65 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Lus10008838 [exp] 61 / 7e-11 AT5G53560 232 / 3e-80 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10036973 [exp] 60 / 9e-11 AT1G26340 193 / 8e-65 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Lus10022357 [exp] 59 / 1e-10 AT5G53560 231 / 2e-79 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10012615 [exp] 59 / 2e-10 AT2G32720 135 / 4e-42 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10010111 [exp] 58 / 3e-10 AT2G32720 137 / 8e-43 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G228200 [exp] 710 / 0 AT2G46210 620 / 0.0 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) Potri.002G165800 [exp] 668 / 0 AT2G46210 728 / 0.0 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) Potri.014G091800 [exp] 655 / 0 AT2G46210 721 / 0.0 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) Potri.010G156900 [exp] 64 / 2e-12 AT1G26340 166 / 4e-54 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Potri.002G242500 [exp] 62 / 1e-11 AT2G32720 221 / 7e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.001G314200 [exp] 58 / 5e-10 AT2G32720 199 / 3e-67 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.017G054300 [exp] 57 / 5e-10 AT2G32720 221 / 6e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.015G007600 [exp] 55 / 6e-09 AT5G53560 153 / 8e-49 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.012G024600 [exp] 54 / 1e-08 AT5G53560 163 / 5e-53 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.002G088600 [exp] 54 / 1e-07 AT1G77760 1394 / 0.0 nitrate reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00173 [flax] [poplar] Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain PF00487 [flax] [poplar] FA_desaturase Fatty acid desaturase
Representative CDS sequence Show only first row Show all	>Lus10031102 pacid=23166712 polypeptide=Lus10031102 locus=Lus10031102.g ID=Lus10031102.BGIv1.0 annot-version=v1.0 ATGGCGGAGTCGAAGAAGAAGTACATTTCCCAGGAGGAGCTAGCCAAGCACAGCAACCCATCCGATTTATGGATCTCAATACAAGGCAAGATCTACAACG TCACCGATTGGACTAAATCCCACCCTGGAGGTTCGTCCCCTTTGCTCAATCTCGCCGGCCAGGACGCCTCCGACGCTTACTATGCCTTCCACCCTCCCAC CGCCTGGAAACACCTCGACGCTTTCTTCACCGGTTACCATCTCCAAGACTACACCGTCTCCGAGGTCTCCAAAGATTACAGAAGGCTTGTATCCGAATTT TCCAAGCTGGGTCTTTTCGACAAGAAAGGCCACGGCGTGCTCGTTTCTTTCCTGGTTATGGCAATGCTCTTTGCTCTCGCTCTCTACGGTATCTTCTGTA GCGACAGCGCTTTGGTTCATTTGCTCTCTGCTGTGATGTTAGGGTTTATGTGGATACAGAGTGGATGGCTTGGCCATGATTCTGGCCATTACCAGATCAT GACCAGCCGCGGGATGAATCGGTTCGCTCAGCTATTGGCTGGGAATTGCCTTGCTGGGATTAGCATTGGTTGGTGGAAATGGAACCACAACGCCCATCAC ATTGCCTGTAACAGTCTGGATTTTGACCCAGATCTACAGCACATCCCATTCTTCGCCGTCTCTTCTAAGCTCTTTACCTCAATCACCTCTTATTTCTATG ACAGGAAGCTGAGTTTCGACCCTGCTGCTAGGTTCCTGGTGAGTTACCAACACCTGACGTTTTACCCTGTCATGTGCCTTGCCAGGATTAATCTCTTTGC TCAGTCTTTCCTACTGCTGCTGTCCAAAAGAAGGGTTCCCAACAGGGCTCAAGAACTTGCAGGGTTAGTTGTGTTCTGGGTTTGGTACCCTTTGCTAGTA TCTTGCTTGCCCAATTGGTGGGAGAGGGTGATGTTTGTGGTGGTTAGCTTCTCGGTTACCGGGGTTCAGCACGTTCAATTCTGTCTCAACCATTTCTCAT CCAGTGTCTATGTTGGCCCTCCTAGCGGAAACGATTGGTTCGAGAAGCAAACAAAGGGGACACTCGACATCTCTTGCTCCTCTTGGATGGACTGGTTCCA TGGTGGACTGCAGTTTCAGGTCGAGCACCATCTGTTTCCTCGTCTGCCGAGATGTCAGCTTCGTAAAGTTTCGCCCTTTGTTCAGGAGCTTTGCAAGAAG CACAACTTGCCGTACAACATTGTCTCCTTCTGGATCGCAAATGTATTGACTTGCAACATACTCAGGACTGTGGCATTGCAAGCTAGGGACATTGGTAACC CGGTTCCGAAGAATTTGGTGTGGGAAGCCCTTAATACCCATGGTTGA
AA sequence Show only first row Show all	>Lus10031102 pacid=23166712 polypeptide=Lus10031102 locus=Lus10031102.g ID=Lus10031102.BGIv1.0 annot-version=v1.0 MAESKKKYISQEELAKHSNPSDLWISIQGKIYNVTDWTKSHPGGSSPLLNLAGQDASDAYYAFHPPTAWKHLDAFFTGYHLQDYTVSEVSKDYRRLVSEF SKLGLFDKKGHGVLVSFLVMAMLFALALYGIFCSDSALVHLLSAVMLGFMWIQSGWLGHDSGHYQIMTSRGMNRFAQLLAGNCLAGISIGWWKWNHNAHH IACNSLDFDPDLQHIPFFAVSSKLFTSITSYFYDRKLSFDPAARFLVSYQHLTFYPVMCLARINLFAQSFLLLLSKRRVPNRAQELAGLVVFWVWYPLLV SCLPNWWERVMFVVVSFSVTGVQHVQFCLNHFSSSVYVGPPSGNDWFEKQTKGTLDISCSSWMDWFHGGLQFQVEHHLFPRLPRCQLRKVSPFVQELCKK HNLPYNIVSFWIANVLTCNILRTVALQARDIGNPVPKNLVWEALNTHG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61580		AtSLD1	sphingoid LCB desaturase 1, Fa...		Lus10031102 [exp]	0	1
AT3G61580		AtSLD1	sphingoid LCB desaturase 1, Fa...		Lus10035482 [exp]	1.0	0.9251
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10001851 [exp]	1.4	0.9240
AT4G00560			NAD(P)-binding Rossmann-fold s...		Lus10040928 [exp]	4.5	0.8885
AT5G04420			Galactose oxidase/kelch repeat...		Lus10028825 [exp]	4.7	0.8714
AT5G11670		ATNADP-ME2	Arabidopsis thaliana NADP-mali...		Lus10006036 [exp]	5.5	0.8969
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10031354 [exp]	6.6	0.8991
AT3G58640			Mitogen activated protein kina...		Lus10020708 [exp]	6.9	0.8957
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10011537 [exp]	7.3	0.8736
AT1G18160			Protein kinase superfamily pro...		Lus10027247 [exp]	8.7	0.8730
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10014976 [exp]	9.2	0.9129

Compare expression of checked genes

Lus10031102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.