Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63690 774 / 0 ATSPPL2 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) AT1G01650 670 / 0 ATSPPL4 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) AT2G43070 407 / 5e-137 ATSPPL3 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) AT1G05820 400 / 5e-134 ATSPPL5 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5, SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (.1.2) AT4G33410 86 / 7e-18 ATSPPL1 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) AT2G03120 80 / 6e-16 ATSPP signal peptide peptidase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017796 [exp] 714 / 0 AT1G01650 802 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10024653 [exp] 703 / 0 AT1G63690 744 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10032285 [exp] 669 / 0 AT1G63690 713 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10018834 [exp] 597 / 0 AT1G01650 685 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10036364 [exp] 533 / 0 AT1G01650 608 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10014769 [exp] 520 / 1e-175 AT4G00370 662 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Lus10001154 [exp] 401 / 2e-134 AT1G05820 563 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5, SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (.1.2) Lus10035484 [exp] 391 / 1e-132 AT1G63690 364 / 3e-122 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10019557 [exp] 164 / 3e-46 AT2G43070 245 / 2e-77 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G128500 [exp] 824 / 0 AT1G63690 857 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Potri.001G103100 [exp] 812 / 0 AT1G63690 829 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Potri.002G160500 [exp] 716 / 0 AT1G01650 838 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Potri.014G085300 [exp] 704 / 0 AT1G01650 810 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Potri.002G232200 [exp] 424 / 2e-143 AT2G43070 626 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.014G150000 [exp] 410 / 5e-138 AT2G43070 570 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.012G142400 [exp] 84 / 3e-17 AT4G33410 633 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) Potri.015G145600 [exp] 82 / 1e-16 AT4G33410 614 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) Potri.009G071600 [exp] 79 / 6e-16 AT2G03120 542 / 0.0 signal peptide peptidase (.1) Potri.001G276700 [exp] 78 / 2e-15 AT2G03120 550 / 0.0 signal peptide peptidase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0130 [flax] [poplar] Peptidase_AD PF04258 [flax] [poplar] Peptidase_A22B Signal peptide peptidase CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10031104 pacid=23166752 polypeptide=Lus10031104 locus=Lus10031104.g ID=Lus10031104.BGIv1.0 annot-version=v1.0 ATGGATTTTCTGAAGTTGAGCTTGCTAATCTGTTTAGCGATTGTTTTAGCTCCCTACTCTGCAAGGGCAGGGGATATAGTTCACGATGATAATTTAGCTC CCAAGAAGCCAGGCTGTCAGAATGACTTCGTCTTGGTGAAAGTTCAAACTTGGGTGAACGGAGTTGAGGATGCTGAATTTGTAGGTGTTGGTGCTAGATT TGGCACGACTATTGTGTCAAAGGAGAAGAACGCTAACCAGACTCGTCTTACTCTTTCAGATCCCCGAGATTGTTGCAAACCGCCAAAGAACAAGCTTGTT GGAGATGTTATCATGGTTGATAGAGGCGGTTGCAGATTCACTGCAAAGGCCAATAATGCACAGGCTGCTGGTGCTTCTGCTGTCCTTATCATAAATAACC AAAAAGAACTTTACAAGATGGTATGTGAACCAGATGAAACAGACCTAAATATACACATACCAGCAATTATGCTGCCTCAGGATGCTGGTGTGACCTTGGA GAAAATGCTATTGACTAATGACCCAGTGTCTCTACAGCTTTACTCTCCTCGGAGGCCATTAGTTGATATAGCTGAAGTGTTCCTATGGTTGATGGCTGTT GGAACTATCTTGTGTGCCTCCTATTGGTCAGCCTGGAGTGCCAGAGAAGCTGCTGCCGAACATGACAAGCTATTGAAGGATGCTGTCGATGGAGTTCCCA ACACAAGATCTGGTCTCAGTAGTGTTGTAAACATTAGTACAACCTCTGCCGTTCTGTTCATCGTGGTTGCTTCGTGCTTGCTAGTGTTACTTTACAAACT CATGTCTTACTGGTTCATTGAGCTTTTGGTGGTTCTTTTCTGCATAGGCGGGGTAGAGGGCCTGCAAACTTGTTTGGTTGCTTTGTTGTCGAGGTGGTTC AAGCGCGCTGGAGAGTCATGTATCAAAGTCCCTGTTTTGGGAGCAGTCTCATACCTAACTTTGGCTGTGTCTCCATTCTGCATTGTTTTTGCTGTTGTCT GGGCTGTTTATCGAAATTCTACTTATGGTTGGATTGGACAAGATATTCTTGGGATTGCTCTGATAATCACCGTTCTCCAGATCGTCCATGTACCCAATCT CAAGGTTGGCACTGTTCTTCTCAGTTGCGCTTTCTTATACGACATCTTCTGGGTGTTTGTCTCTAAGAAGCTGTTCCACGAGAGCGTCATGATCGTAGTA GCTCGAGGCGATAAGAGCGGAGAGGACGGCATCCCAATGCTGTTAAAAATACCGCGGCTCTTTGATCCTTGGGGTGGTTACAGCATTATAGGGTTTGGTG ACATACTTCTACCTGGGTTACTTGTAGCTTTTGCAATCAGGTACGATTGGCTGGTGAACAAGACTCTTCGAGCTGGATACTTCTTGTACGCCATGCTTGC TTATGGGTTAGGCCTTCTGGTAACATACATTGCGCTAAACTTGATGGACGGGCATGGCCAGCCAGCGCTGCTTTACATTGTTCCTTTCACCCTTGGGACA TTTTTGGGACTGGGGAAGAAGAGAGGCGATCTCTCCATCCTGTGGACACAAGGACTACCAGAGAGGCCTTGCCCTCACGTTCATCTCCAGCAAAGCGATG AAGCTGATGATGAAGAACAGTGA
AA sequence Show only first row Show all	>Lus10031104 pacid=23166752 polypeptide=Lus10031104 locus=Lus10031104.g ID=Lus10031104.BGIv1.0 annot-version=v1.0 MDFLKLSLLICLAIVLAPYSARAGDIVHDDNLAPKKPGCQNDFVLVKVQTWVNGVEDAEFVGVGARFGTTIVSKEKNANQTRLTLSDPRDCCKPPKNKLV GDVIMVDRGGCRFTAKANNAQAAGASAVLIINNQKELYKMVCEPDETDLNIHIPAIMLPQDAGVTLEKMLLTNDPVSLQLYSPRRPLVDIAEVFLWLMAV GTILCASYWSAWSAREAAAEHDKLLKDAVDGVPNTRSGLSSVVNISTTSAVLFIVVASCLLVLLYKLMSYWFIELLVVLFCIGGVEGLQTCLVALLSRWF KRAGESCIKVPVLGAVSYLTLAVSPFCIVFAVVWAVYRNSTYGWIGQDILGIALIITVLQIVHVPNLKVGTVLLSCAFLYDIFWVFVSKKLFHESVMIVV ARGDKSGEDGIPMLLKIPRLFDPWGGYSIIGFGDILLPGLLVAFAIRYDWLVNKTLRAGYFLYAMLAYGLGLLVTYIALNLMDGHGQPALLYIVPFTLGT FLGLGKKRGDLSILWTQGLPERPCPHVHLQQSDEADDEEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10031104 [exp]	0	1
AT1G05940		CAT9	cationic amino acid transporte...		Lus10042898 [exp]	3.7	0.8358
AT5G35840		PHYC	phytochrome C (.1)		Lus10006389 [exp]	3.9	0.8233
AT2G20140		RPT2b	regulatory particle AAA-ATPase...		Lus10011901 [exp]	9.2	0.7933
AT4G16070			Mono-/di-acylglycerol lipase, ...		Lus10016834 [exp]	9.8	0.8228
AT2G38610			RNA-binding KH domain-containi...		Lus10034443 [exp]	11.8	0.8313
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10027329 [exp]	16.4	0.8126
AT5G53140			Protein phosphatase 2C family ...		Lus10039341 [exp]	16.6	0.8033
AT5G19670			Exostosin family protein (.1)		Lus10012973 [exp]	17.3	0.7994
AT5G35840		PHYC	phytochrome C (.1)		Lus10012342 [exp]	17.5	0.7582
AT1G06400		ARA2, AtRABA1a,...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10029789 [exp]	18.0	0.8175

Compare expression of checked genes

Lus10031104 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.