Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51710 766 / 0 ATKEA5, KEA5 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) AT5G11800 599 / 0 ATKEA6, KEA6 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1) AT2G19600 597 / 0 ATKEA4 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) AT4G00630 113 / 8e-26 ATKEA2, KEA2 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) AT1G01790 111 / 2e-25 ATKEA1, KEA1 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) AT4G04850 105 / 1e-23 ATKEA3, KEA3 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) AT4G23700 46 / 6e-05 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031687 [exp] 843 / 0 AT5G51710 833 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Lus10040549 [exp] 586 / 0 AT2G19600 851 / 0.0 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) Lus10008002 [exp] 536 / 0 AT2G19600 781 / 0.0 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) Lus10007999 [exp] 389 / 4e-131 AT2G19600 569 / 0.0 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) Lus10008000 [exp] 106 / 5e-26 AT5G51710 149 / 3e-42 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Lus10007104 [exp] 99 / 2e-21 AT4G04850 936 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10020485 [exp] 96 / 9e-21 AT4G04850 704 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10018844 [exp] 85 / 9e-17 AT4G00630 1352 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10017823 [exp] 68 / 1e-11 AT1G01790 660 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G130500 [exp] 796 / 0 AT5G51710 830 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Potri.015G132400 [exp] 783 / 0 AT5G51710 791 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Potri.006G230400 [exp] 624 / 0 AT5G11800 731 / 0.0 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1) Potri.018G054100 [exp] 615 / 0 AT5G11800 740 / 0.0 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1) Potri.014G080800 [exp] 113 / 7e-26 AT1G01790 1300 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Potri.002G157200 [exp] 109 / 1e-24 AT1G01790 1343 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Potri.009G080800 [exp] 101 / 2e-22 AT4G04850 841 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Potri.001G096320 [exp] 43 / 0.0005 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.013G142301 [exp] 43 / 0.0006 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10031106 pacid=23150938 polypeptide=Lus10031106 locus=Lus10031106.g ID=Lus10031106.BGIv1.0 annot-version=v1.0 ATGATCTCCCGGAAGCCAGCATTGTGCGGGTTCTGGTGGTGCTGCCTGCTGCTGATGCTGCTGCTGGCGAGGATTTCCGACTCCGTTAGATCTGACAAGG AGATGAGGGAGAGGTTCTACGGCAATCTGTTGAATTCCACTCCTCCAGCAAGCGGAGAAGGGAGTATTGCCAAGATGTTCGATCGCGTCCTCGAGAAGGA GTTCTCAGATAACGATCAGCCTGAAGGTTCTGATGCAAACAGTTTTAACAACAGTGTGGCGGACCAACAAGCTGTTCTGGAAACTGTAGCTAAAGTTACA CATGAGAAGGGCAAGAAAAATGACACACAGTCGGGAAATGGAACAAGATCATTTCAGTTCCAAGATGTATTTTCGCTAGAGAATGAAGATTCTGAGGATG GCACAACCCTCATTGACAAAAAGGATAACGTCTTTGTCATGTCAAACAAGAAATCTAAATATCCTGTGCTGCAAGTAGATGTTAGGTTAATTTCAGATCT TGTGGTTGGCATAGTTTCTGCTGCCATTGGTGGAATTATATTCTCTTGCTTGGGGCAGCCGGTTATTGTTGGTTATCTTCTTGCTGGGTCACTTGTTGGA CCCGGAGGTCTTAAGTTCATAAGTGAGATGGTACAGGTTGAAACTTTTGCACAGTTTGGTGTCATCTTTCTTCTTTTTGCGTTGGGCCTTGAGTTCTCTA TAACAAAGTTAAGAGTGGTAGGTGCTGTTGCTGTGTTTGGAGGTTTTCTTCAAATTGCGATGTTTATGTTCTTGTGCGGCTTAACTGCTATGTTGTGCGG AGCAAAGTTGTCCGAGGGTGTTTTTGTTGGCTCTTTCTTGTCAATGTCATCAACAGCAGTGGTGGTGAAGTTTTTAGCTGAGCGTAACAGCACTGGTTTA CTTCACGGTCAAGTTACAGTGGGAACACTTATTTTTCAGGATTGTGCTGTTGGCTTGTTGTTTGCTTTACTCCCAGTTTTGGGGGGCAGTAGTGGGTTAC TACATGGAATGATTTCAATGGGAAAATTGTTGTTGGTGTTGTCCATGTACCTCTTGGCTGCGTCATTTTTGTCTTGGTCCTTTGTTCCCCGATTTCTGAA GTTAATGGTCCAGATATCATCCCAAACAAATGAACTATATCAGCTTGCTGCTGTGGCTTTCTGCTTGCTATCAGCTTGGTGCAGTGACAAACTCGGTCTC AGTCTCGAGTTGGGTTCATTTGTTGCCGGAGTTATGATATCTACAACCGATTTTGCACAGCATACTTTAGACCAGGTGGAGCCGATTCGCAATCTGTTTG CAGCCCTGTTTCTTGCAAGTATTGGAATGCTTATACACGTGCAGTTTCTCTGGACCCACGTTGATATACTTTTGGCATCAGTGATTCTCGTTATAGTTGT GAAGACAACTGTCGCGGTTGTGGTTATTAAATCCTTCGGTTATGGCATCCGGACATCATTTCATGTTGGAGTGTTGCTTGCTCAAATCGGGGAGTTCGCA TTCGTTCTGCTTAGCCGTGCCTCAAATCTTAACCTTGTCGAGGGGAAAATGTACCTTCTTCTGATTGGAACAACAGCTCTAAGTCTGGTTACCACTCCTC TCCTGTTCAAATTGATACCTAACGTCATGAATCTCGGAGTCCTTCTCCAATGGTTCCCATCAGAAGGCGGCTCAGCGACCGAGGTCGTAACAACGTTTCT AACAAATTTCGAACAACGTTTCCCATAA
AA sequence Show only first row Show all	>Lus10031106 pacid=23150938 polypeptide=Lus10031106 locus=Lus10031106.g ID=Lus10031106.BGIv1.0 annot-version=v1.0 MISRKPALCGFWWCCLLLMLLLARISDSVRSDKEMRERFYGNLLNSTPPASGEGSIAKMFDRVLEKEFSDNDQPEGSDANSFNNSVADQQAVLETVAKVT HEKGKKNDTQSGNGTRSFQFQDVFSLENEDSEDGTTLIDKKDNVFVMSNKKSKYPVLQVDVRLISDLVVGIVSAAIGGIIFSCLGQPVIVGYLLAGSLVG PGGLKFISEMVQVETFAQFGVIFLLFALGLEFSITKLRVVGAVAVFGGFLQIAMFMFLCGLTAMLCGAKLSEGVFVGSFLSMSSTAVVVKFLAERNSTGL LHGQVTVGTLIFQDCAVGLLFALLPVLGGSSGLLHGMISMGKLLLVLSMYLLAASFLSWSFVPRFLKLMVQISSQTNELYQLAAVAFCLLSAWCSDKLGL SLELGSFVAGVMISTTDFAQHTLDQVEPIRNLFAALFLASIGMLIHVQFLWTHVDILLASVILVIVVKTTVAVVVIKSFGYGIRTSFHVGVLLAQIGEFA FVLLSRASNLNLVEGKMYLLLIGTTALSLVTTPLLFKLIPNVMNLGVLLQWFPSEGGSATEVVTTFLTNFEQRFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51710		ATKEA5, KEA5	K+ efflux antiporter 5, ARABID...		Lus10031106 [exp]	0	1
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Lus10014894 [exp]	2.4	0.8376
AT1G28240			Protein of unknown function (D...		Lus10015438 [exp]	2.8	0.8514
AT5G48560	bHLH	bHLH078	basic helix-loop-helix (bHLH) ...		Lus10003172 [exp]	3.0	0.8244
AT5G51710		ATKEA5, KEA5	K+ efflux antiporter 5, ARABID...		Lus10031687 [exp]	4.0	0.8133
AT3G26000			Ribonuclease inhibitor (.1)		Lus10037060 [exp]	8.5	0.7720
AT1G04200			unknown protein		Lus10039377 [exp]	9.2	0.8014
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Lus10004550 [exp]	13.9	0.7915
AT1G74300			alpha/beta-Hydrolases superfam...		Lus10028853 [exp]	15.3	0.7966
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10000243 [exp]	19.9	0.7807
AT2G28320			Pleckstrin homology (PH) and l...		Lus10021465 [exp]	21.4	0.7895

Compare expression of checked genes

Lus10031106 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.