Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62230 1339 / 0 ERL1 ERECTA-like 1 (.1.2) AT5G07180 1336 / 0 ERL2 ERECTA-like 2 (.1) AT2G26330 1131 / 0 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 493 / 2e-157 Leucine-rich receptor-like protein kinase family protein (.1) AT3G49670 478 / 9e-153 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 480 / 2e-152 Leucine-rich repeat protein kinase family protein (.1) AT5G65700 476 / 6e-152 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G07280 479 / 3e-151 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT2G33170 464 / 4e-146 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G20140 467 / 5e-146 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031689 [exp] 1804 / 0 AT5G62230 1437 / 0.0 ERECTA-like 1 (.1.2) Lus10038071 [exp] 1111 / 0 AT2G26330 1554 / 0.0 QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) Lus10009790 [exp] 1092 / 0 AT2G26330 1547 / 0.0 QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) Lus10011761 [exp] 471 / 2e-150 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019248 [exp] 467 / 2e-148 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10039641 [exp] 463 / 2e-146 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10036251 [exp] 449 / 1e-139 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10018911 [exp] 446 / 2e-139 AT3G24240 1033 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10028612 [exp] 445 / 4e-139 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G132200 [exp] 1406 / 0 AT5G62230 1404 / 0.0 ERECTA-like 1 (.1.2) Potri.012G130400 [exp] 1400 / 0 AT5G62230 1412 / 0.0 ERECTA-like 1 (.1.2) Potri.006G220100 [exp] 1143 / 0 AT2G26330 1547 / 0.0 QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) Potri.019G025500 [exp] 505 / 6e-162 AT5G63930 1320 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G157300 [exp] 476 / 4e-152 AT4G20270 1285 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G073600 [exp] 472 / 1e-150 AT4G20270 1279 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G174900 [exp] 473 / 1e-149 AT2G33170 1348 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.013G051300 [exp] 472 / 3e-149 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G139700 [exp] 466 / 4e-147 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G009200 [exp] 463 / 8e-147 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10031108 pacid=23150973 polypeptide=Lus10031108 locus=Lus10031108.g ID=Lus10031108.BGIv1.0 annot-version=v1.0 ATGGCGGGCTCGAAGCGGTATCTGATGGTTGGATTATGCTCTTACTTGGTTTTGCTTCTCTGTCATACTCCTCTAGCTGCTGCTTCCGACCAAGGAAAAG CTCTGATGTCGATAAAGGGTTCCTTCGGCAACGTAGTAAACATCCTCGTCGACTGGGATGTGTCCCGTAACGACGATTACTGCACTTGGCGTGGAGTGCT CTGTGACAACTCCAGCCTCTCTGTTTTATCTCTAAACCTCTCGAACTTGAACTTGGGCGGTGAGCTTTCCCCCGCCATTGGAGACCTGACCAACATCCAG TCACTAGACCTTCAAGGGAACAATCTATCCGGCCAAATCCCGGACGAAATCGGCAACTGCGACTCCCTTGTCCATCTGGACTTATCTGAGAACTTTTTGT ATGGAGATATCCCTTTCTCCATCTCCAGGCTCAAAGACTTGGAATTTTTGAATTTGAGGAACAATCAGCTCACTGGCCCTATTCCATCTACTCTCACTCA GCTTCCTAATCTCAAAACCATTGACTTTGCTCGGAATCAGCTGAGTGGAGAGATTCCCAGATTAATCTACTGGAACGAAGTCCTTCAGTATCTTGGGTTG CGTGGTAATTTCTTGACTGGAACTCTGTCACCTGATATGTGTCAATTGACTGGCTTGTGGTACTTTGATGTTCGGGGCAATAATTTGACTGGAACAATAC CTGACAGCATTGGCAATTGCACCAGTTTCGAGATACTGGACATATCTTTCAATCAGATCACTGGAGAGATACCTTATAATATTGGCTTCTTGCAAGTAGC CACTCTGTCATTGCAAGGAAACAAGCTGACAGGAAAGATTCCTGAAGTCATTGGTTTAATGCAAGCACTTGCTGTTCTGGATCTGAGTTCGAACCAGCTG GTCGGATCGATACCGAGGATACTCGGAAACTTGACTTACACTGAGAAATTGTACCTGCATGGAAACAAACTGAGTGGTTATGTTCCTCCTGAGCTTGGGA ACATGTCCAGACTTAGCTACTTACAACTGAATGATAATGAGTTGGTTGGTGGGATCCCTCCAGAACTTGGCAAGCTAGAACAGTTGTTTGACCTGAATCT TGCTAACAACAATCTTCAAGGTCCAATTCCTCGTAACATTAGTTCGTGTACTGCACTAAACAAATTCAATGTTCATGGGAATCACTTGAATGGATCTATC CCTCCAGGCTTCAAGAACTTGGGAAGCTTGACTTACCTGAATCTTTCACTGAACAACTTCGAAGGCAGGATTCCTTTTGAGCTCGGACGTATCATGAATC TTGATACACTGGATCTCTCAAGCAATAGTTTCTTTGGCCCGATTCCGGCTTCTGTTGGAGATCTAGAGCACCTTCTCATTTTGAATCTGAGTAAGAATCG ACTCGATGGACCGTTGCCAGGTGAATTCGGTAACCTTCGAAGCATTCAAGTCATTGATGCCTCGTTTAACAATGTCACTGGCACGATTCCGGTTGAGCTC GGTCAGCTACAGAATGTCGCTTCCTTGATTCTGAACAATAACAGCCTTCATGGACAAATTCCCGAACAGCTTGCCAACTGCTTGAGCCTCTCGAATCTGA ACTTCTCTTACAACAACTTGTCAGGAATAGTACCAATCCTCCGAAATTTCTCTCGATTTCCAACTTACAGTTTCGTGGGGAATCCACTGCTCTGCGGGAA CTGGATCGGTTCTATATGCGATCCTTTGACCTCGAAACAAAGAGTAATATTCTCAATGCCGATAGTCGTCTGTATCGTTTTGGGAATCCTGGTCGGTCTT GCTGTGGTCGCACTTGCAATCTACAAGTCCAAGCAGCCGAACCGGTTCAATGATACCACCAACAAACCATTCCAAGGTGTTCCAAAGCTTGTGGTTCTTC ACATGGACATGGCGATTCACAATTTTGACGACATAATTAGGAACACCGAGAACTTCAGTGAAAAATACATCATTGGCTATGGAGCTTCTGGCACAGTATA CAAGTGCTTGCTCAAAAACTCCCGACCAATTGCAGTCAAGCGACTCTACCACCACTATCCATGCAACCTACGAGAGTTCGAAACCGAGCTCGAGACAGTA GGTAGCATCAGGCACAGAAACATAGTCAGCCTCCATGGCTATGCTTTGTCCCCAGTTGGAAACCTCCTGTTCTATGATTACATGCAAAACGGTTCTCTAT GGGATCTCCTTCATGGTCCAACGAAGAAAGTCAAGCTTGATTGGGAGACACGTCTGAAGATTGCGGTTGGTGCAGCTCAAGGACTTGCATATCTTCATCA CGATTGCACCCCAAGGATCGTCCACCGCGATGTGAAGTCCTCTAACATCCTGTTGGACGAGAATTTCGAGGCTCATCTTGCTGATTTCGGGATCGCTAAG TCCATCCCAACGTCGAGGACTCATGCTTCAACTTCTGTACAGGGGACTTTCGGCTACATTGATCCAGAATATGCTCGAACATCACGTCTGAACGAGAAAT CTGATGTCTACAGCTTCGGAATCGTCCTTCTCGAGCTTCTTACCGGCAAGAAGGCAGTGGATAATGATTCCAACTTGCACCAACTGATTATGTCGAAGGC TGATGATGACACGATAATGGAGGCAGTCGATTCGGAAGTTACTGTAACGTGCATGAACTCGAACCATGTCCGGAAAGCTCTCCAGTTGGCTCTTCTCTGC ACGAAGAAGAACCCTTTAGAGAGGCCAACGATGCATGAAGTTGTGAGAGTCTTGGTGTATTTCCTTCCATCTCCTCAGTCAAAGCTCTGCTCCCTTGCAT CCAAAAAAATTGATCTCTCCAAGTTCGTCGCTGAGAAAGAAGAACAGAAACCCCCTACAACTGTGCTGCAACCTCAACATCAACATCAGCAGCATGAATC CAACTCATTGGACGGACAGTGGCTCGTTAGATTCAGAGAAGCTATATCTAACAACACATTTTGA
AA sequence Show only first row Show all	>Lus10031108 pacid=23150973 polypeptide=Lus10031108 locus=Lus10031108.g ID=Lus10031108.BGIv1.0 annot-version=v1.0 MAGSKRYLMVGLCSYLVLLLCHTPLAAASDQGKALMSIKGSFGNVVNILVDWDVSRNDDYCTWRGVLCDNSSLSVLSLNLSNLNLGGELSPAIGDLTNIQ SLDLQGNNLSGQIPDEIGNCDSLVHLDLSENFLYGDIPFSISRLKDLEFLNLRNNQLTGPIPSTLTQLPNLKTIDFARNQLSGEIPRLIYWNEVLQYLGL RGNFLTGTLSPDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISFNQITGEIPYNIGFLQVATLSLQGNKLTGKIPEVIGLMQALAVLDLSSNQL VGSIPRILGNLTYTEKLYLHGNKLSGYVPPELGNMSRLSYLQLNDNELVGGIPPELGKLEQLFDLNLANNNLQGPIPRNISSCTALNKFNVHGNHLNGSI PPGFKNLGSLTYLNLSLNNFEGRIPFELGRIMNLDTLDLSSNSFFGPIPASVGDLEHLLILNLSKNRLDGPLPGEFGNLRSIQVIDASFNNVTGTIPVEL GQLQNVASLILNNNSLHGQIPEQLANCLSLSNLNFSYNNLSGIVPILRNFSRFPTYSFVGNPLLCGNWIGSICDPLTSKQRVIFSMPIVVCIVLGILVGL AVVALAIYKSKQPNRFNDTTNKPFQGVPKLVVLHMDMAIHNFDDIIRNTENFSEKYIIGYGASGTVYKCLLKNSRPIAVKRLYHHYPCNLREFETELETV GSIRHRNIVSLHGYALSPVGNLLFYDYMQNGSLWDLLHGPTKKVKLDWETRLKIAVGAAQGLAYLHHDCTPRIVHRDVKSSNILLDENFEAHLADFGIAK SIPTSRTHASTSVQGTFGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDNDSNLHQLIMSKADDDTIMEAVDSEVTVTCMNSNHVRKALQLALLC TKKNPLERPTMHEVVRVLVYFLPSPQSKLCSLASKKIDLSKFVAEKEEQKPPTTVLQPQHQHQQHESNSLDGQWLVRFREAISNNTF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10031108 [exp]	0	1
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10031608 [exp]	1.4	0.9795
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10031689 [exp]	1.7	0.9767
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10031390 [exp]	2.0	0.9786
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10018520 [exp]	2.8	0.9718
AT4G15880		ATESD4, ESD4	EARLY IN SHORT DAYS 4, Cystein...		Lus10035382 [exp]	3.0	0.9615
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10039362 [exp]	3.5	0.9661
AT1G67040			unknown protein		Lus10017607 [exp]	4.0	0.9637
AT2G26330		QRP1, ER	QUANTITATIVE RESISTANCE TO PLE...		Lus10038071 [exp]	4.6	0.9640
AT1G79180	MYB	ATMYB63	myb domain protein 63 (.1)		Lus10018518 [exp]	5.0	0.9687
AT1G02065	SBP	SPL8	squamosa promoter binding prot...		Lus10028181 [exp]	6.7	0.9525

Compare expression of checked genes

Lus10031108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.