Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11990 93 / 3e-20 Cell cycle regulated microtubule associated protein (.1) AT4G22860 89 / 9e-19 Cell cycle regulated microtubule associated protein (.1.2) AT5G07170 85 / 6e-18 Cell cycle regulated microtubule associated protein (.1) AT5G62240 68 / 3e-12 Cell cycle regulated microtubule associated protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031690 [exp] 510 / 0 AT4G22860 117 / 2e-29 Cell cycle regulated microtubule associated protein (.1.2) Lus10007022 [exp] 81 / 2e-16 AT4G22860 209 / 3e-63 Cell cycle regulated microtubule associated protein (.1.2) Lus10006677 [exp] 64 / 1e-10 AT4G22860 345 / 5e-113 Cell cycle regulated microtubule associated protein (.1.2) Lus10018608 [exp] 44 / 0.0003 AT1G03780 741 / 0.0 targeting protein for XKLP2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G130300 [exp] 140 / 3e-37 AT4G22860 164 / 2e-45 Cell cycle regulated microtubule associated protein (.1.2) Potri.003G117800 [exp] 103 / 8e-24 AT4G22860 377 / 8e-126 Cell cycle regulated microtubule associated protein (.1.2) Potri.001G114400 [exp] 102 / 2e-23 AT4G22860 353 / 4e-117 Cell cycle regulated microtubule associated protein (.1.2) Potri.017G013100 [exp] 44 / 0.0002 AT1G03780 667 / 0.0 targeting protein for XKLP2 (.1.2.3) Potri.007G138600 [exp] 44 / 0.0002 AT1G03780 672 / 0.0 targeting protein for XKLP2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12214 [flax] [poplar] TPX2_importin Cell cycle regulated microtubule associated protein
Representative CDS sequence Show only first row Show all	>Lus10031109 pacid=23151144 polypeptide=Lus10031109 locus=Lus10031109.g ID=Lus10031109.BGIv1.0 annot-version=v1.0 ATGGACGAGTTTGAGGATAGGGAAGCGGATGAGTTTTATTGCGATCCGTTTTCCGGCGTCGTGGAGGAGTTCGACCTCGATTACGAGTTTGACGCGCCGA AGTTCCATGACTTCACCAGGCGTGAAGATGATTCGGAGGCGGAGGAGGCTGAGCGTTGGCTGGATGTTGCTTCCGGATATGCGCCTTCTCCGCTAGCTCT TAAGAGGTATTGGAGGCCTTTGATTGGTGCAGAATCGAATCATTCCAGTTCCACCGCGGCGAATTCTTCCGTGGAAGATGATGATAATGAGACAGGATCA GGATCAAGCAACTGCAAACGAGAAGTGGGATCGAAACCGAAGGAGAAATCTAGAATTCTACAAAAAAGTTTGAGTTTCATGAGTCCAACAGCGAGTCACT TGGCGAAGAAACAGGCAGCTGAACAGATTCGATGCGAGCGATTACTCAGAAGGTTTCCGAAAGATGCCAAGAGCGAAGGCAAGAGTTCGAGGAGTTCATC AACCAGTGGAGTTTCAGCAACCAAACGGCAAAAGCTTGAGGCTGGTTACTTGCGCAAGGCTGCTCGGATGAGACATCAAGCTCAGTTCCCACACAAGGAA TCTGTAAAGGTCAGCTCTAAAGCAGCGTCAGGTAGGTTTAAAGCTACAATACCTATACAGCCAAATCTAGCAACAGCAAATAGAGCTGAAAGGCACAGAT CCAGAGCGAAATCTGAATCGGAACATAGTGGACAGACCATCACTTCTCCTACGGAAACAAGACCATTGAACAAAAAGATCCAGAAGGTTCCTTCGTTGCC TATTCCAAGAAAGGCCACCAGACCGTTACCAGAGCTTCAAGGAGCGAAGCTACACCGTTCAAAATCAACCTCTGAAAAAGAAAACAGAAACTTGACAAGC TTGAATGCGGGTCTTCCTGTTAAGGATAGACGAGAGCTTCGTGAGAAGAGTAAATCTTTCAACATCAAGGGTTCAACCAAAAGACGAGTGATGGATGAGC CACCAGTGGATGCATTTAGTCAGGTTCGCTACCCTCAGATTCTAGAATGCGACCTTAGTTTCGAGTTTCTTAACGACTCACAAACTTTGTGTGCTCTTTG CAATGTCTATCCAGCTCTCTCTAGCGTCAAAAATCCATTCAGCCGCTCATCGTCAGGCAAAGGTTGCTACAAAGGAGAATGCACGGAGGGATCCGAAACG AGACACAGAGGTACACCACTAGAAACGCTCATCATCGATTTCATATGTGCATATGGTTAG
AA sequence Show only first row Show all	>Lus10031109 pacid=23151144 polypeptide=Lus10031109 locus=Lus10031109.g ID=Lus10031109.BGIv1.0 annot-version=v1.0 MDEFEDREADEFYCDPFSGVVEEFDLDYEFDAPKFHDFTRREDDSEAEEAERWLDVASGYAPSPLALKRYWRPLIGAESNHSSSTAANSSVEDDDNETGS GSSNCKREVGSKPKEKSRILQKSLSFMSPTASHLAKKQAAEQIRCERLLRRFPKDAKSEGKSSRSSSTSGVSATKRQKLEAGYLRKAARMRHQAQFPHKE SVKVSSKAASGRFKATIPIQPNLATANRAERHRSRAKSESEHSGQTITSPTETRPLNKKIQKVPSLPIPRKATRPLPELQGAKLHRSKSTSEKENRNLTS LNAGLPVKDRRELREKSKSFNIKGSTKRRVMDEPPVDAFSQVRYPQILECDLSFEFLNDSQTLCALCNVYPALSSVKNPFSRSSSGKGCYKGECTEGSET RHRGTPLETLIIDFICAYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07170			Cell cycle regulated microtubu...		Lus10031109 [exp]	0	1
AT1G77020			DNAJ heat shock N-terminal dom...		Lus10042774 [exp]	1.4	0.8448
AT1G77020			DNAJ heat shock N-terminal dom...		Lus10029744 [exp]	2.4	0.8273
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Lus10008621 [exp]	5.7	0.7182
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10001087 [exp]	9.0	0.7641
AT1G68350			unknown protein		Lus10034340 [exp]	12.4	0.7449
AT1G72880			Survival protein SurE-like pho...		Lus10008390 [exp]	14.3	0.7565
AT1G80170			Pectin lyase-like superfamily ...		Lus10036084 [exp]	19.3	0.6722
AT5G08350			GRAM domain-containing protein...		Lus10013445 [exp]	20.8	0.7106
AT1G73850			Protein of unknown function (D...		Lus10027226 [exp]	22.0	0.7236
AT3G01750			Ankyrin repeat family protein ...		Lus10022330 [exp]	23.7	0.7046

Compare expression of checked genes

Lus10031109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.