Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51670 378 / 5e-127 Protein of unknown function (DUF668) (.1) AT5G04550 164 / 2e-44 Protein of unknown function (DUF668) (.1) AT3G23160 149 / 3e-39 Protein of unknown function (DUF668) (.1) AT1G34320 86 / 1e-17 Protein of unknown function (DUF668) (.1) AT1G30755 67 / 9e-12 Protein of unknown function (DUF668) (.1) AT5G08660 63 / 2e-10 Protein of unknown function (DUF668) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031691 [exp] 800 / 0 AT5G51670 452 / 2e-156 Protein of unknown function (DUF668) (.1) Lus10022201 [exp] 149 / 1e-38 AT3G23160 657 / 0.0 Protein of unknown function (DUF668) (.1) Lus10021210 [exp] 147 / 4e-38 AT3G23160 659 / 0.0 Protein of unknown function (DUF668) (.1) Lus10008987 [exp] 146 / 7e-38 AT5G04550 566 / 0.0 Protein of unknown function (DUF668) (.1) Lus10021138 [exp] 139 / 1e-35 AT5G04550 300 / 2e-94 Protein of unknown function (DUF668) (.1) Lus10002840 [exp] 139 / 2e-35 AT5G04550 308 / 8e-98 Protein of unknown function (DUF668) (.1) Lus10028839 [exp] 131 / 4e-33 AT5G04550 282 / 2e-89 Protein of unknown function (DUF668) (.1) Lus10006049 [exp] 86 / 1e-17 AT1G34320 919 / 0.0 Protein of unknown function (DUF668) (.1) Lus10017136 [exp] 81 / 5e-16 AT1G34320 570 / 0.0 Protein of unknown function (DUF668) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G129900 [exp] 545 / 0 AT5G51670 466 / 6e-162 Protein of unknown function (DUF668) (.1) Potri.015G131800 [exp] 534 / 0 AT5G51670 442 / 1e-152 Protein of unknown function (DUF668) (.1) Potri.008G026800 [exp] 161 / 3e-43 AT5G04550 677 / 0.0 Protein of unknown function (DUF668) (.1) Potri.010G233700 [exp] 159 / 2e-42 AT5G04550 677 / 0.0 Protein of unknown function (DUF668) (.1) Potri.006G117000 [exp] 155 / 4e-41 AT5G04550 356 / 8e-116 Protein of unknown function (DUF668) (.1) Potri.010G074000 [exp] 149 / 8e-39 AT3G23160 657 / 0.0 Protein of unknown function (DUF668) (.1) Potri.008G164700 [exp] 148 / 2e-38 AT3G23160 661 / 0.0 Protein of unknown function (DUF668) (.1) Potri.013G115300 [exp] 79 / 3e-15 AT1G34320 889 / 0.0 Protein of unknown function (DUF668) (.1) Potri.019G085900 [exp] 78 / 4e-15 AT1G34320 908 / 0.0 Protein of unknown function (DUF668) (.1) Potri.005G240300 [exp] 78 / 5e-15 AT1G30755 588 / 0.0 Protein of unknown function (DUF668) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11961 [flax] [poplar] DUF3475 Domain of unknown function (DUF3475) PF05003 [flax] [poplar] DUF668 Protein of unknown function (DUF668)
Representative CDS sequence Show only first row Show all	>Lus10031110 pacid=23151089 polypeptide=Lus10031110 locus=Lus10031110.g ID=Lus10031110.BGIv1.0 annot-version=v1.0 ATGGCGCCGCTAGAAACATGGCTAATCAAAGCAGTAAAATCCGCAATCAACCTCCCACGATCCACCTCCACCAAGCCCTCCAAAACTGTCGGCATCCTCT CCTTCGAGATCGCCTCCCTAATGACCAAGCTCATCCACCTCTGGCAATCCCTCTCCGACAAGAACGTCATCCGCCTCAAGAACGACTCCATCTCCTTACA AGGAGTCCGCAAGATCGTCTCCAACGACGAGTCCTTTCTCCTCGGACTCGCCTGCGCCGAACTCACCGAAAACATCCGCCTCGTCGCGAAATCCGTCTCC CGAATCGCTGCCGCCCGCTGCTCGGACTCGAACCACCGCCGGTTTAACCGGTGGTTCGACCGGTTCGCCGACTCCGGCCACGACCCCAACGGGTGGGTGG TCAGCTGGAAGGAGATGGAAGGGAAAGTGAATCGGAAGATGGACCGTTACGTGACGGCGACTGCTAATTTAAGAAAGGAGATCGATGAGCTGACGGCGGT GGAGACGGCGTTGAGGAAGGCCGTTAGTAATTGTGGAGATGAGACGACGTCGTTGAAGGAGCAGAAGATTACTGATCTCCGGCAGAAGGTGTTCTGGCAG CGGCAGGAGGTTAAGTCGTTGAAGGAGAAGTCTCTTTGGAATCGGAGCTTCGACGGCGTTGTTTCTATTTTGGCTAGATCTACTTTTACTGTGTTGGCGA GAGTAAAATTGGTTTTCGGTTTAGGACATGGATTTCCTACTTGTTTACCGAGGAGCCTCTCCGCTTCCGCTGCCGTGTACCCGTCCGGAAACCCGACTGA TAACCAGACGGACAACCAAACACAAACCCACTTCGTCTCCGGTCAGTTAACGAAGAGTGTTAAGAAGGATACCGACAAGAAATCAGAATCCAATGCGAAT TCATCGTTCTTCGAGGCGAATTCGGAGATGCTAAAGCCGCCGGCGACAACGCTGGGGGCGGCAGCGCTGGCCTTACACTACGCGAATCTGATCATCGTGA TGGAGAAGATGATCAAGTCTCCGCAGCTGGTGGGGATCGACGCGAGGGACGACCTCTACGCGATGCTGCCGAGCAGCGTTAGATCAGCGCTCCGGCAGAG GCTGAGAGGTGTCGGGTTCACTGCGACGGATCCGGGTTTAGCCGGCGAGTGGAAGGACGCGCTTGGGAGGGTGCTGAGCTGGCTGTCGCCGCTAGCTCAC AACATGATCAAGTGGCAGAGTGAACGTAGCTTCGAGCAGCAGAATTCATCGTCGTCGCCAGCGTCGCCGAAGTCGACGGCGCACGTGATGCTTCTACAGA CGCTGTACTTTGCGAACAAGGAGAAGGCGGAGGCGGCGATCACAGAGCTTCTTGTGGGGCTGAATTACATATGGCGGTTCGAGAGGGAGATGACGGCGAA GGCTCTGTTCGAGTGCGGCGGCGGGTTGATGCTGAAGAGCTCCGGTAAAGATGGATGTTGA
AA sequence Show only first row Show all	>Lus10031110 pacid=23151089 polypeptide=Lus10031110 locus=Lus10031110.g ID=Lus10031110.BGIv1.0 annot-version=v1.0 MAPLETWLIKAVKSAINLPRSTSTKPSKTVGILSFEIASLMTKLIHLWQSLSDKNVIRLKNDSISLQGVRKIVSNDESFLLGLACAELTENIRLVAKSVS RIAAARCSDSNHRRFNRWFDRFADSGHDPNGWVVSWKEMEGKVNRKMDRYVTATANLRKEIDELTAVETALRKAVSNCGDETTSLKEQKITDLRQKVFWQ RQEVKSLKEKSLWNRSFDGVVSILARSTFTVLARVKLVFGLGHGFPTCLPRSLSASAAVYPSGNPTDNQTDNQTQTHFVSGQLTKSVKKDTDKKSESNAN SSFFEANSEMLKPPATTLGAAALALHYANLIIVMEKMIKSPQLVGIDARDDLYAMLPSSVRSALRQRLRGVGFTATDPGLAGEWKDALGRVLSWLSPLAH NMIKWQSERSFEQQNSSSSPASPKSTAHVMLLQTLYFANKEKAEAAITELLVGLNYIWRFEREMTAKALFECGGGLMLKSSGKDGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51670			Protein of unknown function (D...		Lus10031110 [exp]	0	1
AT5G51670			Protein of unknown function (D...		Lus10031691 [exp]	1.0	0.9219
AT3G12920		BRG3	BOI-related gene 3, SBP (S-rib...		Lus10031202 [exp]	7.7	0.7725
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10010349 [exp]	8.4	0.7588
AT2G01650		PUX2	plant UBX domain-containing pr...		Lus10034612 [exp]	11.6	0.7598
AT1G80400			RING/U-box superfamily protein...		Lus10011475 [exp]	14.0	0.7680
AT2G44600			unknown protein		Lus10043351 [exp]	18.0	0.7204
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Lus10033934 [exp]	18.1	0.7844
AT5G52990			SNARE-like superfamily protein...		Lus10022397 [exp]	21.7	0.7397
AT5G40250			RING/U-box superfamily protein...		Lus10032161 [exp]	22.0	0.7590
AT5G52430			hydroxyproline-rich glycoprote...		Lus10039253 [exp]	22.4	0.7171

Compare expression of checked genes

Lus10031110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.