Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51660 2044 / 0 CPSF160, ATCPSF160 cleavage and polyadenylation specificity factor 160 (.1) AT4G05420 87 / 8e-17 DDB1A damaged DNA binding protein 1A (.1.2) AT4G21100 85 / 3e-16 DDB1B damaged DNA binding protein 1B (.1) AT3G55200 48 / 8e-05 AtSAP130a Arabidopsis thaliana spliceosome-associated protein 130 a, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) AT3G55220 48 / 8e-05 AtSAP130b, SAP130b, AtSAP130ab Arabidopsis thaliana spliceosome-associated protein 130 b, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031692 [exp] 2803 / 0 AT5G51660 2142 / 0.0 cleavage and polyadenylation specificity factor 160 (.1) Lus10033455 [exp] 79 / 2e-14 AT4G05420 1519 / 0.0 damaged DNA binding protein 1A (.1.2) Lus10020922 [exp] 79 / 3e-14 AT4G21100 1606 / 0.0 damaged DNA binding protein 1B (.1) Lus10040321 [exp] 58 / 8e-08 AT3G55220 2125 / 0.0 Arabidopsis thaliana spliceosome-associated protein 130 b, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) Lus10023443 [exp] 56 / 3e-07 AT3G55220 2237 / 0.0 Arabidopsis thaliana spliceosome-associated protein 130 b, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G022700 [exp] 2257 / 0 AT5G51660 2117 / 0.0 cleavage and polyadenylation specificity factor 160 (.1) Potri.001G357900 [exp] 92 / 2e-18 AT4G05420 1995 / 0.0 damaged DNA binding protein 1A (.1.2) Potri.008G048900 [exp] 63 / 2e-09 AT3G55200 2254 / 0.0 Arabidopsis thaliana spliceosome-associated protein 130 a, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) Potri.010G212100 [exp] 63 / 2e-09 AT3G55200 2243 / 0.0 Arabidopsis thaliana spliceosome-associated protein 130 a, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF03178 [flax] [poplar] CPSF_A CPSF A subunit region
Representative CDS sequence Show only first row Show all	>Lus10031111 pacid=23151022 polypeptide=Lus10031111 locus=Lus10031111.g ID=Lus10031111.BGIv1.0 annot-version=v1.0 ATGAGCTTCGCCGCCTGCAAGATGATGCACTGGCCTACCGGCATCGAGTGCTGCGACTCCGGCTTTATCACACATTGCCGCGCCGACTACGTCCCTCCAA TCTCCGGTATGCAGACCGACGACCTCGACTCCGAGTGGCCTTCCGACGGGAGCAGGAGCATTGGCGCAATCCCTAACCTCGTCGTCACCGCAGGCAACGT CCTTGAGCTCTACGTAGTTAGGGTGCAGCACGAATCCAATAGGAATTCAGCTGAATTGAAACGTGGCGGTATCGTCGACGGCATTTCCGGTGCTTCTCTC GAGCTCGTGTGCCATTACAGGTTGCACGGTAACGTTGAATCAATGGCTGTACTGTCTACGGACGGAGGTGATAGTTCGAGGAGAAGAGATGCTATTGTAT TGGCATTTAAAGATGCTAAGATTTCGGTGTTGGAGTTTGACGATTCGATACATGGGCTCCGTACTAGCTCTATGCATTGTTTTGAAGGTCCAGAATGGTG CCATTTGAAAAGAGGTAGGGAGTCTTTTGCTCGAGGGCCATTAGTGAAGGTTCATCCACGAGGCAGATGTGGTGGCGTTCTTGTTTATGATTTACAGATG ATAATACTTAGTGCTGCTGAGGTCGGTTCTGGTTTGATTGGAGATGATGATGCTTTTAGCTCTGGAGGAGCCATATCTGCTAGTATCAAGTCATCTTACA TTATCAATCTTAGAGACTTGGATGTGAAGCATGTAAAAGACTTTGTATTTATACATGACTATATGGAGCCTGCAGTGGTTATCCTTCATGAGCAAGAGCT TACTTGGGCTGGTCGCGTAGCATGGAAGCATCACACATGTGTCATATCTGCTTTTAGCATTAGCACAACGTCAAAGCCACCAACCCTGATATTTTCATCT GTGAATCTCCCGCATGATGCTTACAAGCTACTTGCTGTCCCTCTCCCAATTGGAGGCGTTCTTGTGATCGGCACAAATTCAATACATTATTACAATCAGT CAGCCTCGTGTACTTTGGCTTTGAACCATTATGCAGTTCCTATTGACAGCAGCCAAGAGCTACCAAGAGCAAGCTTTAATGTTGAACTTGATGCTGCCAA TGCAACTTGGTTACTCAATGATGTGGCCTTATTGTCGACAAAAACTGGGGAACTACTTTTGCTAACCCTGGTTTATGATGGAAGGGTTGTGCAGAGGCTT GATCTTTCAAAGTCTAAAGCCTCAGTTCTAACTTCGGACATTGCCATGATTGGAAAATCATTGTTCTTTCTGGCAAGTCGTCTGGGAGACAGCTTGCTTG TACAATTTACCAGCGGATCAGTGTCCGATGTTTCTCCTGGCTTGAAAGAAGAGGTTGGTGACATTGATGAAGTTCATTCAGCTAAGAGGTTGAAGAGACT GTCGTCCGATGCTTTACAAGATGGGATGAGCGTTGATGAGCTTTCTTTGTATGGTTCAAACAATACTGAATCAGCACAGAAAACCTTCTCATTTGCAGTG AGAGATTCATTGGTCAATGTTGGTCCTTTGAAGGACTTCTCCTATGGCTTCCGAATCAATGCTGATGCAAATGCAACTGGAATTGCAAAACAGAGCAACT ATGAATTGGTCTCCTGTTCAGGTCATGGTAAAAATGGTGCTCTATCTGTTCTTCGGCAGTCAATTCGTCCTGATACGATTACAGAGGTAGAGTTACCTGG TTGCAAAGGGATCTGGACTGTCTACCATAAAAATTCCCGTGGTCACAATGCAGATTCATCTAAAATAGCAGCCTATGATGATGAATTTCATGCGTATTTA ATTATAAGTATGGAGGCCCGTACGATGGTTCTCGAAACTGGTGACCTTTTGACAGAGGTTACTGAAAGCGTTGACTACTTTGTTCAAGGACGGACAATTG CTGCAGGGAATTTGTTTGGAAGGCGTCGAGTTGTTCAGGTCTATGAACGCGGTGCACGAATCCTTGATGGTTCTTTTATGACTCAAGATTTGAGCATCTG TGCTGCTAACACTGAATTGGGTCCGGGTGTCGAGACCTGTACTGTACTGTCTGTCTCCATTGCTGATCCATATGTGCTAATAAAAATGACAGACGGGAGC ATAAGACTTCTTGTTGGAGATACTTCTACATGTACCGTTTCTGTGAAAACTCCACCTGCCTTTCAAATCTCGAAGAAGGCAGTATCTGCATGCACCCTGT ATCATGATAAAGGGCCAGAGCCGTGGATCCGAAAGACAAGTACTGATGCATGGCTTTCAACAGGGATTTCTGAGCCCATAGATGGTACTGATGGTGGCTC GCATGATCATGGTGACATATATTGCATTGTTTGTTACAAAACCGGTGCCCTAGAGATATTCGATGTACCAAACTTCAGTTCGGTGTTTTATGTGGATAAA TTTGTTTCTGGGAAAAGCCACCTTGCTGATAACAACCTGCAAGAATCGTCTGATGAGTCACTGGAAGCAACAAGTACAAGTTCTGGTGTAGATGCAGCCC TTGGTAGCAAAGAGGGCACACATAACCTAAAAGTCGTAGAGTTGGCTATGCAAAGATGGTCTGGGCACCACAGTCGTCCTTTTCTGTTGGGAATATTGAC TGATGGGACAATACTTTGTTATCATGCTTACCTGTTTGAAGGTCCAGACAGTACCATAAAGCCTGAAGCTTCTGCATCTAGGCTTAGAAATTTGAGATTT GCACGTGCCCCATTAGATACTTACATGAGGGAAGAAACATCAAGTGGAAGCAATAGTCAAAGAATGACGATTTTCACAAATATTAGTGGTCATCAAGGAT TTTTCCTATCAGGGTCAAGACCAGCTTGGTTTATGGTTCTACGAGAGCGTTTACGTATTCATCCACAGCTGTGTGATGGTTCTATTGTTGCTTTCACTGT TCTTCACAATGTTAACTGCAATCATGGCTTCATCTATGTGACATCCCAGGGAATTTTGAAGATTTGCCAACTACCATCTGACTGCAACTATGATAATTAT TGGCCTGTTCAAAAGGTACCACTGAGAGGAACACCCCATCAGGTCACTTATTTCAACGAGAAAAACTTGTACCCTCTTATAGTTTCCGTTCCTGTTCAAA AGCCACTCAATCAAGTTCTTTCTTCACTAGTTGATCAAGAAGGCAACCATCAGATCGAGAGTCAGAACATGACTTCAGATGAACTTCATAACACCTACAC TGTAGAAGAATATGAAGTGCGGATCTTGGAACCTGAGAAATCGGGTGGCCCTTGGCAAACAAAGGCTACAATCCCAATGCATACTTCAGAAAATGCACTT ACAGTGCGAATGGTCACACTGTTTAACACAACCACGAAGGAGAATGAAACCCTTTTGGCCATTGGGACTGCGTATGTACAAGGGGAGGATGTCGCTGCAA GAGGACGAATACTTCTGTTTTCTCTCGGAAAGAACACAGAGAACTCTCAGGTGTCGGTCTCTGAAGTTTATTCCAAGGAACTGAAGGGAGCCATATCTGC TTTAGCCTCACTGCAAGGTCATCTGTTACTAGCTTCTGGCCCAAAAATTATTCTACACAAGTGGACTGGTACAGAACTGAATGGGGTCGCCTTTTTCGAT GCTCCACCATTATACGTGGTCAGCTTAAACATTGTCAAGAATTTTATCCTCTTGGGTGATATTCACAAGAGTATCTATTTCCTTAGTTGGAAGGAGCAAG GCGCACAGCTAAGCCTATTAGCCAAGGACTTCAGTTCCCTCGATTGCTTCGCTACTGAGTTCTTAATCGATGGCAGTACATTGAGCCTTGTCGTTTCGGA CGCACAGAAGAATGTTCAGATATTCTACTACGCTCCAAAAATGTCAGAGAGCTGGAAAGGACAGAAGCTGCTCTCCAGGGCCGAGTTCCACATTGGCTCT CATGTGACCAAGTTCATGCGGATGCAAATGCTTTCAACAGCATCAGACCGTGGCGGTTCTGCTCCAGTGTCTGACAAAACCAATCGATTCGCCTTACTGT TTGCAACGCTGGATGGAAGCATTGGCTGCATCACACCTCTGGACGAGATCACTTTCCGTAGGTTACAGTCCGTACAGAAGAAGCTCGTCGAAGCTGTTCC TCACGTTGCCGGGTTAAACCCCAGATCCTTCCGCCAGTTCCACACAGATGGGAAAGCTCACCGACCTGGCCCCGAAAGCATTGTGGATTGCGAACTGCTA TCCCATTACGAAATGCTGCCGCTCGAGGAACAGCTCGAGATCGCTCAACAGGTTAGGACAACTCGTGAACAGATGGTAGAGGGAGCAGATGGTCTCGACG AGCAACGAGAAGAGCTAGCGTATGCAATGGGCAGTACGATAGTCGCCTCCGAGGCTCGTAAACTGTGGAAAGACGAGAATGGGAGTATGATCAAATTTAG CTCGAGGATTGAGAACTAA
AA sequence Show only first row Show all	>Lus10031111 pacid=23151022 polypeptide=Lus10031111 locus=Lus10031111.g ID=Lus10031111.BGIv1.0 annot-version=v1.0 MSFAACKMMHWPTGIECCDSGFITHCRADYVPPISGMQTDDLDSEWPSDGSRSIGAIPNLVVTAGNVLELYVVRVQHESNRNSAELKRGGIVDGISGASL ELVCHYRLHGNVESMAVLSTDGGDSSRRRDAIVLAFKDAKISVLEFDDSIHGLRTSSMHCFEGPEWCHLKRGRESFARGPLVKVHPRGRCGGVLVYDLQM IILSAAEVGSGLIGDDDAFSSGGAISASIKSSYIINLRDLDVKHVKDFVFIHDYMEPAVVILHEQELTWAGRVAWKHHTCVISAFSISTTSKPPTLIFSS VNLPHDAYKLLAVPLPIGGVLVIGTNSIHYYNQSASCTLALNHYAVPIDSSQELPRASFNVELDAANATWLLNDVALLSTKTGELLLLTLVYDGRVVQRL DLSKSKASVLTSDIAMIGKSLFFLASRLGDSLLVQFTSGSVSDVSPGLKEEVGDIDEVHSAKRLKRLSSDALQDGMSVDELSLYGSNNTESAQKTFSFAV RDSLVNVGPLKDFSYGFRINADANATGIAKQSNYELVSCSGHGKNGALSVLRQSIRPDTITEVELPGCKGIWTVYHKNSRGHNADSSKIAAYDDEFHAYL IISMEARTMVLETGDLLTEVTESVDYFVQGRTIAAGNLFGRRRVVQVYERGARILDGSFMTQDLSICAANTELGPGVETCTVLSVSIADPYVLIKMTDGS IRLLVGDTSTCTVSVKTPPAFQISKKAVSACTLYHDKGPEPWIRKTSTDAWLSTGISEPIDGTDGGSHDHGDIYCIVCYKTGALEIFDVPNFSSVFYVDK FVSGKSHLADNNLQESSDESLEATSTSSGVDAALGSKEGTHNLKVVELAMQRWSGHHSRPFLLGILTDGTILCYHAYLFEGPDSTIKPEASASRLRNLRF ARAPLDTYMREETSSGSNSQRMTIFTNISGHQGFFLSGSRPAWFMVLRERLRIHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSDCNYDNY WPVQKVPLRGTPHQVTYFNEKNLYPLIVSVPVQKPLNQVLSSLVDQEGNHQIESQNMTSDELHNTYTVEEYEVRILEPEKSGGPWQTKATIPMHTSENAL TVRMVTLFNTTTKENETLLAIGTAYVQGEDVAARGRILLFSLGKNTENSQVSVSEVYSKELKGAISALASLQGHLLLASGPKIILHKWTGTELNGVAFFD APPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLSLLAKDFSSLDCFATEFLIDGSTLSLVVSDAQKNVQIFYYAPKMSESWKGQKLLSRAEFHIGS HVTKFMRMQMLSTASDRGGSAPVSDKTNRFALLFATLDGSIGCITPLDEITFRRLQSVQKKLVEAVPHVAGLNPRSFRQFHTDGKAHRPGPESIVDCELL SHYEMLPLEEQLEIAQQVRTTREQMVEGADGLDEQREELAYAMGSTIVASEARKLWKDENGSMIKFSSRIEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51660		CPSF160, ATCPSF...	cleavage and polyadenylation s...		Lus10031111 [exp]	0	1
AT5G51660		CPSF160, ATCPSF...	cleavage and polyadenylation s...		Lus10031692 [exp]	1.0	0.9863
AT5G40820		ATATR, ATRAD3, ...	ARABIDOPSIS THALIANA ATAXIA TE...		Lus10025091 [exp]	2.4	0.9557
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Lus10007498 [exp]	2.8	0.9573
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Lus10001170 [exp]	2.8	0.9639
AT3G06530			ARM repeat superfamily protein...		Lus10008676 [exp]	4.6	0.9624
AT3G11964			RNA binding;RNA binding (.1)		Lus10029327 [exp]	5.0	0.9566
AT4G23540			ARM repeat superfamily protein...		Lus10035446 [exp]	5.7	0.9540
AT3G27130			unknown protein		Lus10012529 [exp]	7.1	0.9385
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10031129 [exp]	8.5	0.9425
AT5G09840			Putative endonuclease or glyco...		Lus10020866 [exp]	8.8	0.9503

Compare expression of checked genes

Lus10031111 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.