Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42020 543 / 0 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G28540 517 / 3e-178 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT1G09080 500 / 2e-171 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G02500 402 / 4e-135 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT1G16030 385 / 7e-127 HSP70B heat shock protein 70B (.1) AT3G09440 380 / 6e-125 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT3G12580 379 / 2e-124 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT5G02490 378 / 4e-124 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT1G56410 376 / 8e-124 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT5G09590 299 / 2e-93 HSC70-5, mtHSC70-2 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031114 [exp] 659 / 0 AT5G28540 590 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10031213 [exp] 523 / 0 AT5G28540 504 / 3e-174 heat shock protein 70 (Hsp 70) family protein (.1) Lus10017306 [exp] 519 / 7e-178 AT5G28540 1169 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10023043 [exp] 522 / 2e-171 AT1G64550 1249 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10017022 [exp] 472 / 2e-160 AT5G42020 986 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10021345 [exp] 467 / 3e-160 AT5G28540 843 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10003202 [exp] 468 / 3e-159 AT5G42020 1133 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10031208 [exp] 422 / 1e-144 AT5G28540 386 / 1e-129 heat shock protein 70 (Hsp 70) family protein (.1) Lus10020977 [exp] 419 / 2e-140 AT5G28540 779 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G143600 [exp] 526 / 0 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.001G087500 [exp] 524 / 0 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.012G017600 [exp] 521 / 6e-180 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.013G018000 [exp] 489 / 2e-167 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.001G042700 [exp] 387 / 9e-128 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G206600 [exp] 385 / 4e-127 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G042600 [exp] 383 / 3e-126 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G205800 [exp] 382 / 8e-126 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054000 [exp] 382 / 1e-125 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205700 [exp] 381 / 3e-125 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10031112 pacid=23151098 polypeptide=Lus10031112 locus=Lus10031112.g ID=Lus10031112.BGIv1.0 annot-version=v1.0 ATGGCCGAATCTAGAGGAGGAGCTCGTGGTCTCATGATCCTCTTGGCGTTTCTGTTATTAGGAAATATGCAGATTGCAGATTGCATATTCCTCGAACGGC AACCACGTGTGTTTGCAATAGATCTCGGCGCAACTTATTCTTGCGGAGTATATAAGAAAGGCGAAGTCCAAATCATAGCCAACGAACAAGGGAACCGAGT CACCCCATCCTTGGTTGGCTTCACTGACAATGAGACATTGATCGGCGAGGCTGCAAAGAACCAGACAGCTTCGAACCCAGAAAGAACCATCTTCGATGTT AAGAGGCTTATTGGAAGAAAGTTTGATGACGAAGAGGTCCAGAGGGCAATGAAAGTTGTCCCTTACAAGATTGTGAACAAGGAAGGCAAGCCGTACATCG AGGTGAAGATCAAGGATGGAGAGACAAAGTTGTCCAGTCCAGAAGAGATCAGTGCAATGATTTTGCATAAGATGAAGGAATCAGCTGAGGCTTTCCTCGG GGAGAAGATCGAAGAAGATGCTGTGATCACCGTTCCTGCCTACTTCAACGATGCTCAGAGACAGTCAACAAAGGATGCTGGTGTTATCGCGGGGCTTAAT GTGATTGGGATCATCGACGAGCCTACTGCTGCTGTCATCGCCTATGATTTGAACCTGCAACGTGACAAGTTGAAGATTCTGGTCTTTAATCTTGGCGGCC ATACCTTTGATGCCACTATCTTGAAAATTGATAATAGAGCTATTGACGTCCTATCAACCATTGTGGACAGCCATTTGGGAGGTCTGAGAAAGTTGAGAAA TTTTTCGCTTTCAGGTGAGGACTTCGATCAAAGAATCATGGAGTACTTGATCGAGTCGATCAAGAACAAGTATGGAAAGGACATGAGCAACAAGGCTGAT GATGTTGCTAAGCTAAGGAGGGAAGCTGAACTTGCCAAGAGAGCTTTGAGCACGCAGCATCAAGTCCGTGTTGAAATCGAATCGTTTTTCAACGAATCAC TTAGCAGAAGTCGGTTCGAGGAACTGAACGATGATCTGTTCAAGAAGACGCTGGTCCACGTGGAAAAGGCCATGAAAGACGCCGGGTTGGAGGATAAGAA GGAAATTGATGAGATAGTACTAGCGGGTGGGAGTAGCAGAATCCCCAAGGTTCAACAGCTCCTAAGAGATTACTTCGACGGCAAGGAACTCAACATGGGA ATGAACCCTGATGAAGTTGTTGCTTATGGTGCTGCCATCCAGGGAGCGTTTCTGTACAGGCAGCTAAATCCTCCCAGCTATTTTGTTAACCCCTCTAAGG TGCCACGTTTGAGCCAAGATGAGATTGAGCTCATGGTACTAGAAGCAGAAGTGTGGGCAAACAAGGATAAAGACGATTGTAATCGCCTGGAGACCTACTT GAAGAAGCTGATCAATGACGAGGATGGGAAGGTTGAAGCTGCGGCCAAGGAAGGCCTGAAATGGCTGGACCGCTGGGGATTCCCGAGGAAAGAAACTTAT GAAGAGAAGCTAAAGGAGGTTGAAGCTGTTTGCAAGCGGCAACCCAATACTGAAACAATGACTACAACGTTGGTAACTAGTTACACGGCTTCATAA
AA sequence Show only first row Show all	>Lus10031112 pacid=23151098 polypeptide=Lus10031112 locus=Lus10031112.g ID=Lus10031112.BGIv1.0 annot-version=v1.0 MAESRGGARGLMILLAFLLLGNMQIADCIFLERQPRVFAIDLGATYSCGVYKKGEVQIIANEQGNRVTPSLVGFTDNETLIGEAAKNQTASNPERTIFDV KRLIGRKFDDEEVQRAMKVVPYKIVNKEGKPYIEVKIKDGETKLSSPEEISAMILHKMKESAEAFLGEKIEEDAVITVPAYFNDAQRQSTKDAGVIAGLN VIGIIDEPTAAVIAYDLNLQRDKLKILVFNLGGHTFDATILKIDNRAIDVLSTIVDSHLGGLRKLRNFSLSGEDFDQRIMEYLIESIKNKYGKDMSNKAD DVAKLRREAELAKRALSTQHQVRVEIESFFNESLSRSRFEELNDDLFKKTLVHVEKAMKDAGLEDKKEIDEIVLAGGSSRIPKVQQLLRDYFDGKELNMG MNPDEVVAYGAAIQGAFLYRQLNPPSYFVNPSKVPRLSQDEIELMVLEAEVWANKDKDDCNRLETYLKKLINDEDGKVEAAAKEGLKWLDRWGFPRKETY EEKLKEVEAVCKRQPNTETMTTTLVTSYTAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10031112 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Lus10006794 [exp]	6.8	0.6934
AT1G20450		LTI45, ERD10, L...	LOW TEMPERATURE INDUCED 45, LO...		Lus10005652 [exp]	97.1	0.6068
AT5G25050			Major facilitator superfamily ...		Lus10026893 [exp]	150.0	0.5747
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10013495 [exp]	273.8	0.5180

Compare expression of checked genes

Lus10031112 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.