Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23945 135 / 4e-35 Eukaryotic aspartyl protease family protein (.1) AT5G10770 100 / 1e-22 Eukaryotic aspartyl protease family protein (.1) AT4G30040 96 / 2e-21 Eukaryotic aspartyl protease family protein (.1) AT1G64830 90 / 2e-19 Eukaryotic aspartyl protease family protein (.1) AT2G35615 87 / 2e-18 Eukaryotic aspartyl protease family protein (.1) AT2G03200 85 / 2e-17 Eukaryotic aspartyl protease family protein (.1) AT1G31450 84 / 4e-17 Eukaryotic aspartyl protease family protein (.1) AT5G33340 80 / 6e-16 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT5G22850 79 / 1e-15 Eukaryotic aspartyl protease family protein (.1) AT2G36670 76 / 2e-14 Eukaryotic aspartyl protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019960 [exp] 117 / 1e-28 AT2G23945 256 / 5e-81 Eukaryotic aspartyl protease family protein (.1) Lus10031207 [exp] 113 / 1e-28 AT2G23945 63 / 4e-11 Eukaryotic aspartyl protease family protein (.1) Lus10011615 [exp] 112 / 1e-26 AT2G23945 224 / 5e-68 Eukaryotic aspartyl protease family protein (.1) Lus10031450 [exp] 108 / 2e-25 AT4G30030 231 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10023451 [exp] 103 / 8e-24 AT2G23945 232 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10023445 [exp] 102 / 2e-23 AT5G33340 448 / 9e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10015486 [exp] 102 / 3e-23 AT2G23945 248 / 3e-76 Eukaryotic aspartyl protease family protein (.1) Lus10041151 [exp] 101 / 3e-23 AT5G33340 445 / 1e-154 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10031449 [exp] 101 / 4e-23 AT2G23945 219 / 3e-66 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G179500 [exp] 155 / 3e-42 AT2G23945 412 / 3e-141 Eukaryotic aspartyl protease family protein (.1) Potri.003G087900 [exp] 97 / 1e-21 AT5G33340 430 / 8e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G105300 [exp] 92 / 5e-20 AT2G35615 414 / 2e-142 Eukaryotic aspartyl protease family protein (.1) Potri.014G114400 [exp] 91 / 1e-19 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.016G000600 [exp] 90 / 3e-19 AT5G10770 286 / 2e-91 Eukaryotic aspartyl protease family protein (.1) Potri.006G118800 [exp] 79 / 2e-15 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.018G106500 [exp] 78 / 2e-15 AT4G30030 150 / 2e-41 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 77 / 5e-15 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 74 / 3e-14 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.002G104600 [exp] 72 / 2e-13 AT1G09750 531 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031113 pacid=23150998 polypeptide=Lus10031113 locus=Lus10031113.g ID=Lus10031113.BGIv1.0 annot-version=v1.0 ATGTCTTCCCTACTCTTCTTACTCCTCCTCCACCTTGTTCCTGCCAACATTCCAATCTCTACTACTGCTGCTCCGATCCACGTCCAGCTCACCCACCGGG ATTCCAATCGATCCCCTCTATACAACCCAAACGAGACTCAGTGGGACCGCCAGGAGCGCCTCAACCGAATCTCCGATGCACGTCTCGCTTCTTACTACTA CCAAGCTGCACAAAAAAACAGGTATGATGATGTTGCCGCCGCCGCCGTTTATAGTGCACCTCTTGTTCCAACAGACAACGGCCTTCTGTTTGTGAGTTTC GGAATTGGCGAACGACCAGTACAACTGCTCGCCTTCATGGATATAGGGAGTAGCCTTCTTTGGGTCGAGTGTCGGTCGACTGGAAATAAACAAACATCTA CTTTATACAATCCCAACTGGTCTTCCACGAGACGGTATTTGACTTGCGACGATCCAGCCTGCATGAAGGTTCCGTATAGATCCTGTCCTAGGCTGCGGGA TAGGTGTATCTATGAGCAGACGTACGGGGACCAATCGGTGTCAACGGGCTTCTTAACGACCGAGCAGTTTGTGTTTCAGAACTCCTCACTCGTTTGGAAA GACGTGGTATTCGGATGCTCCTTGACATACTCGAATCAGGCCAAGCCCTTGGACCACAGGTTTTCAGGTTTATTCGCTTTGGGCGCAGGCCCGCTTTCCC CGGTCAAAGACCAAGTCTTCTCCGTCTGTCTAGGCGACGCCAAAGATCGCAACTACGAATTCCACCATCTCGTGCTGATGGACGACATGAATGAAGTACT TGAGAAATCTACCCTTCACCTCACCGTGACTGACTTGAAGACCAATGCCAACCATTACATTGTGCAGCTCTACAGTATCAAAATGGAGGATGATGGGGAG GATCTCATTCCCATGGTCCGGAATCATGTCGATGTTATTCTAGATACTGGGTCCATTACGAGCTATTTCCCCGTTGATATATTATATCCTCTTCGCTATC AATTGGACAAGGTGATATGGGAGGTTAATCCAAACACGATGAAGATGGCCGATGAAGCTGAAGACCAGTGGTGTTACCGAGGAGTCGTTGAGGATTTCAA CTCTGATCAGCTCAAGCTCATTCTTTACTTTCCTGGGAGTGCTAAGATTGTGTGGCGATTCGACTCCATCCTATATCAAGTCTTGGAAACCAAGGTCTGC CTATCGCTACGCTCGTCCACAAAAGTTGGAAACGCCTCCCTAATCGGACTTCTCGGTCTGCAAAACCACAAACTAACGTTCGACGCTATGCACGGGTCCC TGTACATGGACCCTGATTTCCCTTGTGAACAAATGGGTGAGTAG
AA sequence Show only first row Show all	>Lus10031113 pacid=23150998 polypeptide=Lus10031113 locus=Lus10031113.g ID=Lus10031113.BGIv1.0 annot-version=v1.0 MSSLLFLLLLHLVPANIPISTTAAPIHVQLTHRDSNRSPLYNPNETQWDRQERLNRISDARLASYYYQAAQKNRYDDVAAAAVYSAPLVPTDNGLLFVSF GIGERPVQLLAFMDIGSSLLWVECRSTGNKQTSTLYNPNWSSTRRYLTCDDPACMKVPYRSCPRLRDRCIYEQTYGDQSVSTGFLTTEQFVFQNSSLVWK DVVFGCSLTYSNQAKPLDHRFSGLFALGAGPLSPVKDQVFSVCLGDAKDRNYEFHHLVLMDDMNEVLEKSTLHLTVTDLKTNANHYIVQLYSIKMEDDGE DLIPMVRNHVDVILDTGSITSYFPVDILYPLRYQLDKVIWEVNPNTMKMADEAEDQWCYRGVVEDFNSDQLKLILYFPGSAKIVWRFDSILYQVLETKVC LSLRSSTKVGNASLIGLLGLQNHKLTFDAMHGSLYMDPDFPCEQMGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23945			Eukaryotic aspartyl protease f...		Lus10031113 [exp]	0	1
					Lus10009892 [exp]	1.0	0.9981
					Lus10019151 [exp]	2.0	0.9968
AT5G44390			FAD-binding Berberine family p...		Lus10042382 [exp]	2.8	0.9724
AT3G44970			Cytochrome P450 superfamily pr...		Lus10013060 [exp]	3.5	0.9924
AT1G13680			PLC-like phosphodiesterases su...		Lus10000649 [exp]	3.5	0.9852
AT4G39830			Cupredoxin superfamily protein...		Lus10009603 [exp]	4.9	0.9900
AT3G08990			Yippee family putative zinc-bi...		Lus10004823 [exp]	5.5	0.9853
AT2G40290			Eukaryotic translation initiat...		Lus10024444 [exp]	6.7	0.9567
					Lus10012079 [exp]	7.0	0.9766
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10002831 [exp]	7.3	0.9722

Compare expression of checked genes

Lus10031113 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.