Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28540 547 / 0 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT5G42020 546 / 0 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G09080 531 / 0 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G16030 419 / 4e-140 HSP70B heat shock protein 70B (.1) AT3G12580 412 / 2e-137 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT5G02500 407 / 3e-137 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT3G09440 409 / 3e-136 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G02490 407 / 2e-135 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT1G56410 403 / 2e-134 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT5G09590 335 / 3e-107 HSC70-5, mtHSC70-2 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031112 [exp] 601 / 0 AT5G28540 543 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10023043 [exp] 553 / 0 AT1G64550 1249 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10017306 [exp] 546 / 0 AT5G28540 1169 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10003202 [exp] 506 / 2e-174 AT5G42020 1133 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10031213 [exp] 495 / 6e-172 AT5G28540 504 / 3e-174 heat shock protein 70 (Hsp 70) family protein (.1) Lus10021345 [exp] 494 / 4e-171 AT5G28540 843 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10017022 [exp] 498 / 7e-171 AT5G42020 986 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10020977 [exp] 449 / 3e-152 AT5G28540 779 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10015483 [exp] 449 / 3e-152 AT5G28540 758 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G143600 [exp] 555 / 0 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.001G087500 [exp] 554 / 0 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.012G017600 [exp] 554 / 0 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.013G018000 [exp] 513 / 5e-177 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.001G042700 [exp] 423 / 1e-141 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G042600 [exp] 417 / 3e-139 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G205700 [exp] 416 / 6e-139 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G206600 [exp] 413 / 6e-138 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G205800 [exp] 411 / 4e-137 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054000 [exp] 410 / 1e-136 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10031114 pacid=23151037 polypeptide=Lus10031114 locus=Lus10031114.g ID=Lus10031114.BGIv1.0 annot-version=v1.0 ATGTCGATGTTTTCAGGAAATATGCAGATTGCAGATTGCCTTACCAGAAAAGGACGTGTGATTGCAATGGATCTCGGTGCAACTTCTTCTTGCGTTGGTG TATACAAGAATAGTGGCGTCAAAATCATAGCCAACAAACAAGGGAACCGTATCACCCCATCCTTGGTTGCCTTCACTGACAATGAGACATTGATCGGTGA GGCTGCAAAGAACCAGACAGCTTCAAATCCGGAAAGAACCATCTTTGATGTCAAGAGGCTTATTGGAAGAAAGTTTGACGACGAAGAGGTCCAGAGGGCA ATAAAACATGTCCCTTACAAGATAGTGAACAAGGAAGGCAAACCGTACATCGAGGTGAAGATCAAGGATGGAAAGACCAAGTTGTTCAGTCCTGAAGAGA TCAGTGCAATGATTTTGCATAAGATGAAGGAATCAGCCGAGGCTTTCCTCGGAGAGAAGATCATAGATGCTGTGATCACCGTTCCTGCCTACTTCAATGA TGCTCAGAGACAGTCAACAAAGGATGCTGGTGTTATGGCGGGGCTTAATGTGACTAGCATCATTGACGAGCCTACTGCTGCTGCCTTCCCCTATCATTTC GACACAAAGAAGGTTCTGGTCTTTACTCTTGGTGGTCGTACCTTTGATGCCAGTATCTTGAAAATTGATGATAAAGCTGTCCAGGTCCTATCAACCAGTG GGGACAGCCATTTGGGAGGTGAGGACTTTGATCAAAGAATCACGGAGTACTTGATCAAGTTGATTAAGAACAATTACGGAAAGGACATCAGCAAAAAGGC TGATGCTGTTGGTAAGCTAAGGATACTAGCTGAACGTGCTAAGAGAGCTCTGAGCAGGCAGCATCAAGTCCGTATTGAAATCGAATCGTTTTTCGGGGTA GTAGATTTTTCCGAGTCACTGAGCAGAAGTCGGTTTGAGCAATTGAACAATGATCTGTTCGAGAAGACGCTGGCCCATGTGGAAAAGGCGATAAAAGACG CCGGGTTGGAGAACAAGAAGGAAATAGATGAGATAGTACTAGTGGGTGGAAGTAGCAGAATCCCCAAGGTTCAACAGCTCCTCAAAGATTACTTCGACGG CAAGGAACCCCACAAGCCAGAGACAATGAACCCTGATGAAGCCGTTGCTTATGGTGCTGCCATCCAGGGAGATATTCAGATTCTGAACCAAGGGCAAGAT CGAAATAAGGAGCAAGATCTGAACAAGAAGAAGTTTTGGGTCGAACTCCCCCCTTTGGCATTTTTTGACCTCCCCCCGGACAAGGAGCGATTTATCAGCC AAGAAGAGGCTGAGCAGTCTGAACTCAGGTTCCGTGAAGTAGAAGAGTGGATTGAAGATCTGGACAAGGATAGAGAGGATAGGATTGACGCTCTTAATCG CCTGGAGACCTACGTGAAGAAGTTGATCAACGACAAGGACGAGAAGGTTAAAGCTGCGGCCAAGGAGGCTTTGAAATGGCTGGATGAGAACCCGGGATAC CTTGAGAAAGAAGTTTATGAAGAGAAACTAAAGGACGTTGAAGCTGTTTGCAACCCAGTAGTGATACGGTTGATGCCTTAA
AA sequence Show only first row Show all	>Lus10031114 pacid=23151037 polypeptide=Lus10031114 locus=Lus10031114.g ID=Lus10031114.BGIv1.0 annot-version=v1.0 MSMFSGNMQIADCLTRKGRVIAMDLGATSSCVGVYKNSGVKIIANKQGNRITPSLVAFTDNETLIGEAAKNQTASNPERTIFDVKRLIGRKFDDEEVQRA IKHVPYKIVNKEGKPYIEVKIKDGKTKLFSPEEISAMILHKMKESAEAFLGEKIIDAVITVPAYFNDAQRQSTKDAGVMAGLNVTSIIDEPTAAAFPYHF DTKKVLVFTLGGRTFDASILKIDDKAVQVLSTSGDSHLGGEDFDQRITEYLIKLIKNNYGKDISKKADAVGKLRILAERAKRALSRQHQVRIEIESFFGV VDFSESLSRSRFEQLNNDLFEKTLAHVEKAIKDAGLENKKEIDEIVLVGGSSRIPKVQQLLKDYFDGKEPHKPETMNPDEAVAYGAAIQGDIQILNQGQD RNKEQDLNKKKFWVELPPLAFFDLPPDKERFISQEEAEQSELRFREVEEWIEDLDKDREDRIDALNRLETYVKKLINDKDEKVKAAAKEALKWLDENPGY LEKEVYEEKLKDVEAVCNPVVIRLMP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10031114 [exp]	0	1
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040732 [exp]	1.0	0.9127
					Lus10018952 [exp]	1.4	0.8793
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10000474 [exp]	2.0	0.8479
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10029061 [exp]	2.6	0.8235
					Lus10027003 [exp]	3.0	0.8715
AT1G77130		PGSIP2, GUX3	glucuronic acid substitution o...		Lus10018922 [exp]	5.9	0.7692
AT4G21520			Transducin/WD40 repeat-like su...		Lus10002602 [exp]	7.2	0.7998
AT1G26930			Galactose oxidase/kelch repeat...		Lus10023608 [exp]	7.9	0.7867
AT1G65620	AS2	AS2	ASYMMETRIC LEAVES 2, Lateral o...		Lus10013610 [exp]	8.9	0.7959
AT1G68460		ATIPT1	Arabidopsis thaliana isopenten...		Lus10041440 [exp]	10.7	0.7678

Compare expression of checked genes

Lus10031114 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.