Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13820 50 / 2e-08 AtXYP2 xylogen protein 2, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) AT3G22580 42 / 2e-05 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT3G22600 40 / 0.0002 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014681 [exp] 43 / 3e-05 AT3G22600 126 / 3e-37 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10039348 [exp] 40 / 0.0003 AT3G22600 163 / 7e-52 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10010572 [exp] 40 / 0.0003 AT3G22600 162 / 2e-51 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G210100 [exp] 43 / 2e-05 AT5G64080 118 / 7e-34 xylogen protein 1, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Potri.010G085400 [exp] 39 / 0.0004 AT3G22600 140 / 1e-42 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.008G155100 [exp] 38 / 0.001 AT3G22600 149 / 2e-46 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031115 pacid=23151074 polypeptide=Lus10031115 locus=Lus10031115.g ID=Lus10031115.BGIv1.0 annot-version=v1.0 ATGGCTCTCTTTGCTTTTTACTTAATCGTTTTGGTTACTCACTTGAGCTCTCCTTCAGCATCTATTCCTACTGATCTACCTCCTCCTCATCTCCCTCCCG ACGGCACGGATTGCGTCGATCCATTGTTTCGGATGGTGGCACCTTGCTTCGACTATATTGCCGTCAACACCACATTGTTGATCAGCGAGTCGAACGATTG CTGTTCGGCATTGAAGGCCGTTTCCTCCACAAAGCCGGAGTGCTTGTGTGAGCTTTTTTACAGCTCCGGCTATGTAAACGGCGACATGGATCTTGCCAAG GGGTTTCGGGTATTTGAAGTTTGCGGTGTTGGTTCGGGATCTCACGTCTCCGATTGCAAAGCGGAGTTGGGATTTACTACTAATACTACCGATGATGCTG CTAAGGATGCCGGTTCTGGATCGTCGTCTTCGTCATACGTCTCAGTGCCTCTGATGGTTTCGCTTGCTGTTATCTACCTCCATTGTCACCTACCTACTGC ATTAGTTTGA
AA sequence Show only first row Show all	>Lus10031115 pacid=23151074 polypeptide=Lus10031115 locus=Lus10031115.g ID=Lus10031115.BGIv1.0 annot-version=v1.0 MALFAFYLIVLVTHLSSPSASIPTDLPPPHLPPDGTDCVDPLFRMVAPCFDYIAVNTTLLISESNDCCSALKAVSSTKPECLCELFYSSGYVNGDMDLAK GFRVFEVCGVGSGSHVSDCKAELGFTTNTTDDAAKDAGSGSSSSSYVSVPLMVSLAVIYLHCHLPTALV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13820		AtXYP2	xylogen protein 2, Bifunctiona...		Lus10031115 [exp]	0	1
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Lus10005537 [exp]	5.8	0.9781
AT5G43120			ARM-repeat/Tetratricopeptide r...		Lus10024789 [exp]	6.2	0.9527
					Lus10026293 [exp]	11.0	0.9749
AT1G31310	Trihelix		hydroxyproline-rich glycoprote...		Lus10040629 [exp]	12.5	0.9732
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10043211 [exp]	12.6	0.9748
AT3G18960	B3		AP2/B3-like transcriptional fa...		Lus10012046 [exp]	13.2	0.9765
AT5G01150			Protein of unknown function (D...		Lus10003168 [exp]	14.5	0.9737
AT1G15330		AtPV42a	Cystathionine beta-synthase (C...		Lus10029432 [exp]	15.8	0.8695
					Lus10016534 [exp]	16.7	0.9723
AT5G45980	HD	WOX9B, STPL, WO...	WUSCHEL related homeobox 9B, S...		Lus10013960 [exp]	16.9	0.9729

Compare expression of checked genes

Lus10031115 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.