Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51640 607 / 0 TBL17, YLS7 YELLOW-LEAF-SPECIFIC GENE 7, TRICHOME BIREFRINGENCE-LIKE 17, Plant protein of unknown function (DUF828) (.1) AT4G25360 596 / 0 TBL18 TRICHOME BIREFRINGENCE-LIKE 18 (.1.2) AT5G15890 251 / 1e-73 TBL21 TRICHOME BIREFRINGENCE-LIKE 21 (.1) AT4G11090 248 / 1e-73 TBL23 TRICHOME BIREFRINGENCE-LIKE 23 (.1) AT4G23790 247 / 3e-73 TBL24 TRICHOME BIREFRINGENCE-LIKE 24 (.1) AT1G70230 238 / 6e-70 AXY4, TBL27 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) AT5G15900 237 / 1e-69 TBL19 TRICHOME BIREFRINGENCE-LIKE 19 (.1) AT1G01430 237 / 2e-69 TBL25 TRICHOME BIREFRINGENCE-LIKE 25 (.1) AT4G01080 229 / 2e-66 TBL26 TRICHOME BIREFRINGENCE-LIKE 26 (.1) AT3G28150 219 / 3e-63 AXY4L, TBL22 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031695 [exp] 1582 / 0 AT5G51640 613 / 0.0 YELLOW-LEAF-SPECIFIC GENE 7, TRICHOME BIREFRINGENCE-LIKE 17, Plant protein of unknown function (DUF828) (.1) Lus10015026 [exp] 687 / 0 AT5G51640 624 / 0.0 YELLOW-LEAF-SPECIFIC GENE 7, TRICHOME BIREFRINGENCE-LIKE 17, Plant protein of unknown function (DUF828) (.1) Lus10038902 [exp] 668 / 0 AT5G51640 615 / 0.0 YELLOW-LEAF-SPECIFIC GENE 7, TRICHOME BIREFRINGENCE-LIKE 17, Plant protein of unknown function (DUF828) (.1) Lus10005952 [exp] 248 / 3e-74 AT1G01430 464 / 5e-163 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10029454 [exp] 245 / 2e-72 AT1G01430 488 / 2e-171 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10024167 [exp] 243 / 7e-72 AT5G15900 381 / 3e-130 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10003061 [exp] 233 / 6e-68 AT5G15900 488 / 5e-172 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10032367 [exp] 233 / 3e-67 AT4G11090 521 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Lus10034087 [exp] 230 / 5e-67 AT5G15890 490 / 1e-172 TRICHOME BIREFRINGENCE-LIKE 21 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G129700 [exp] 669 / 0 AT4G25360 640 / 0.0 TRICHOME BIREFRINGENCE-LIKE 18 (.1.2) Potri.015G131600 [exp] 666 / 0 AT4G25360 671 / 0.0 TRICHOME BIREFRINGENCE-LIKE 18 (.1.2) Potri.004G105500 [exp] 257 / 5e-77 AT5G15900 398 / 1e-136 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.017G110200 [exp] 253 / 2e-75 AT5G15900 419 / 2e-144 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.017G073700 [exp] 246 / 4e-73 AT3G28150 442 / 3e-154 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) Potri.003G137800 [exp] 247 / 6e-73 AT4G11090 500 / 4e-176 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.001G093800 [exp] 245 / 4e-72 AT4G11090 516 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.002G168400 [exp] 244 / 4e-72 AT1G01430 495 / 4e-174 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.014G095800 [exp] 243 / 1e-71 AT1G01430 498 / 2e-175 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.011G144100 [exp] 233 / 1e-68 AT3G28150 415 / 9e-144 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10031117 pacid=23151166 polypeptide=Lus10031117 locus=Lus10031117.g ID=Lus10031117.BGIv1.0 annot-version=v1.0 ATGGCAATGAAGTCCGGTTGGCCTAAGGGCTCTGCTTCTGTGGCAACTGCTGCATTCCCACGGTCTTTAGCTTACATTGCTGTTTCAGTGGCTGGACTTG CTCTGTTTCTGTTCCTTGCTTCGTTGCTTTTGGTTTCCAGTCCGATTTCTTCCACGGTTCAGGGATACTTTTACAAGGTTGATACTTTGGAAGTGATTCA GCGGAATCAAAATGATACAGTTAGTAATGTAGGCCTCGATACTAATAATCCATCTAGATTGGAATCGAATGTGGAAGTTGTTCCGGTTGCTGATAAGGAA CGGAAAGAGGAGTCGGAGAAGGAGGATACAGGATTGAGTGTTAAAGATCCAGTTATTAGTAAAGAACAGAAAGAGGAATCTGTGAAGAAGGATTCAGGAT TGGAGATTCAAGCTCCGGTTACTTATAAAGAACGGGAAGTGGATTCGGAGAAGGAAGATGCAGGATCAAATGTTGAAGATCCAGTTATTAATAAAGAACA GAAAGAGGAATCTGTGAAGAAGGATTCTGGATTGGAGATTCCAGTTCCGGTTACTGATAAAGAACGGGAAGTGGAGTCGTCCGAGAACAAGGATTCAGGA TTGAATCTTCAAGCTCTGGTTACTGATAAAGAACGGGAAGTTGAGTCTGAGAAGAAAGATGCAGGATTGGAGATTCAAACTCCGGTTAGTGATAAAGAAC AGGAAGTGGACTTCGAGAAGAAGGATTCAGGATCGGAGATTCAAGCTCCGGTTACTGATAGAGAACCAGAAGTGGACTCCGAGAACAAGGATTCAGGATC AGAGATTCAAGCTCCGGTTGCTGATAAAGAACCGGAAGTGGAGTCCGAGAAGAAGGATTCGGGATTGAAGATTCAAGCTTCGGTTGCTGATAAAGAACGG GAATTGGAGTCTAACAAGAAGGATTCAGGATTGGAGATTCAAGCCCCGGTTACTGATAACGAAGAGGAAGTGGAGTCTGAGAAGAAGGATTCAGGATTGG AGATTCAAGCTGAAGCTCCGGTTACCGATAAAGGACGGGAAGTGGAGTCCGAGAAGAAGGCTTCAGGATCGAATCTTCAAGTTCCGGTTACTGATAAAGA ATCGGAAGTGGAGTCTGACAAGAAAGATTCGGGACTGGAGATTCAAGCTCCGGTTTCTGATAAAGAAGAAGTGGAGTCTGGGAAGAAGGATTTCGGACTG GAGATTCAAGCTCCGGTTACTAATAAAGAAAGGGAAGTGGAGTCCGAGAAGAAGGATATTCAACCTGTGACTAATAAAGGACGGAAAGAGGAGCCTGGTA AGAAGGATCCCGAGTTGAATCTTCAAGCTCCAATTACTGATAAAGAACGGATAGTGGAGTCTGAGAAGAGGGATCCTGAGCTGAATCTTCAAGTTCCGAT TACTAATAGAGGACGGAAAGAGGATCCCGGGAAGAAGGATGGTCCGGTGCCTATTGCCACGAACGATGTAGGTAGAAAGAGTTTCCCTAGTGTAGATAAC GGTGTGAAAGATGAAGGGACTAGCTCAGTCCCATCGGCAAGCCAAAAGGCCACGACTCGGTCGGATGATTTAGGTTGTGATCTGTTCAAGGGAAATTGGT TCTACGACCCCATTGGACCTTCATACACGAACAATAGCTGTCCAGTCATTACACAGATGCAAAACTGCCAAGGAAACGGAAGACCTGACCGCGAATACGA AAGTTGGCGATGGAAGCCTTCTCAATGTGATCTCCCGCGGTTTGATGCCAAGAAGTTTCTCGAACTGATGAGAGGAAAGACCATAGCTTTCATCGGCGAC TCTGTTGCTCGGAACCACATGGAATCATTAATGTGCCTTCTCTGGCAGGCAATTCCGAAAAACCGAGGGAACAGAAGAATGCACCGCTACTACTTCAGAT CGACATCGACCATGATCGTCCGGATGTGGTCATCTTGGCTTGTTCATCAAACACCAGAAGCTATCGACTTTGCTCCGGAAGGCGTTACGAAAGTTCACCT TGACGCCCCCGACGAGAACTTCATGCAATTCGTACCGACTTTCGACGTGGTTGTTCTCTCTTCGGGCCACTGGTTCGCCAAGCAGTCGGTCTACGTCTTG AACAAGGAAATCGTCGGAGGACAACTGTGGTGGCCGGATAAATCTCGAGTACCGAAGATCAGCAACATCGAAGCATTCGCTATTTCAGTTGAGACCATTG TGGCATCGATGCTTACTCATCCGAATTACACGGGATTGACCATTTTAAGATCGTATTCTCCCGACCATTATGAAGGTGGAGCGTGGAACACCGGCGGTTC TTGTACCGGGAAGACTAGACCGCTCGAACCGGAACAACTGGTGAGGAACGATTACGTTAACATAATGCACGAGAAGCAGGTGACGGGGTATCAGAAAGGA GTGAAGAAGGCGGCGAATAAATCGAAGATCAAGCTGATGGACGTCACCGAAGTGTTTAGCTACCGTCACGATGGTCATCCTGGACCGTACCGGAGTTCTG ATCCGAACAAGAGGACTCAGTACGGTCCGGATGGAAGGCCTCCTCCTCAGGATTGCTTACACTGGTGCATGCCGGGTCCGATTGATACCTGGAACGAACT CGTGCTCGAGATCATCAAACGAGAATTCGAAGTGAAAAAGAGCACTTAA
AA sequence Show only first row Show all	>Lus10031117 pacid=23151166 polypeptide=Lus10031117 locus=Lus10031117.g ID=Lus10031117.BGIv1.0 annot-version=v1.0 MAMKSGWPKGSASVATAAFPRSLAYIAVSVAGLALFLFLASLLLVSSPISSTVQGYFYKVDTLEVIQRNQNDTVSNVGLDTNNPSRLESNVEVVPVADKE RKEESEKEDTGLSVKDPVISKEQKEESVKKDSGLEIQAPVTYKEREVDSEKEDAGSNVEDPVINKEQKEESVKKDSGLEIPVPVTDKEREVESSENKDSG LNLQALVTDKEREVESEKKDAGLEIQTPVSDKEQEVDFEKKDSGSEIQAPVTDREPEVDSENKDSGSEIQAPVADKEPEVESEKKDSGLKIQASVADKER ELESNKKDSGLEIQAPVTDNEEEVESEKKDSGLEIQAEAPVTDKGREVESEKKASGSNLQVPVTDKESEVESDKKDSGLEIQAPVSDKEEVESGKKDFGL EIQAPVTNKEREVESEKKDIQPVTNKGRKEEPGKKDPELNLQAPITDKERIVESEKRDPELNLQVPITNRGRKEDPGKKDGPVPIATNDVGRKSFPSVDN GVKDEGTSSVPSASQKATTRSDDLGCDLFKGNWFYDPIGPSYTNNSCPVITQMQNCQGNGRPDREYESWRWKPSQCDLPRFDAKKFLELMRGKTIAFIGD SVARNHMESLMCLLWQAIPKNRGNRRMHRYYFRSTSTMIVRMWSSWLVHQTPEAIDFAPEGVTKVHLDAPDENFMQFVPTFDVVVLSSGHWFAKQSVYVL NKEIVGGQLWWPDKSRVPKISNIEAFAISVETIVASMLTHPNYTGLTILRSYSPDHYEGGAWNTGGSCTGKTRPLEPEQLVRNDYVNIMHEKQVTGYQKG VKKAANKSKIKLMDVTEVFSYRHDGHPGPYRSSDPNKRTQYGPDGRPPPQDCLHWCMPGPIDTWNELVLEIIKREFEVKKST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51640		TBL17, YLS7	YELLOW-LEAF-SPECIFIC GENE 7, T...		Lus10031117 [exp]	0	1
AT5G51640		TBL17, YLS7	YELLOW-LEAF-SPECIFIC GENE 7, T...		Lus10031695 [exp]	1.0	0.8674
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Lus10009984 [exp]	2.0	0.8573
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Lus10029266 [exp]	6.9	0.8149
AT4G31080			Protein of unknown function (D...		Lus10009547 [exp]	7.1	0.8258
AT1G04200			unknown protein		Lus10006619 [exp]	14.9	0.8256
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10037795 [exp]	16.4	0.8394
AT1G77610			EamA-like transporter family p...		Lus10029663 [exp]	16.7	0.8246
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10000243 [exp]	18.4	0.7877
AT3G24715			Protein kinase superfamily pro...		Lus10038159 [exp]	21.0	0.7903
AT1G19835			Plant protein of unknown funct...		Lus10024325 [exp]	25.5	0.8312

Compare expression of checked genes

Lus10031117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.