Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12080 149 / 5e-43 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localized protein 1 (.1) AT4G25320 147 / 9e-42 AT-hook AT hook motif DNA-binding family protein (.1) AT5G62260 144 / 2e-40 AT-hook AT hook motif DNA-binding family protein (.1) AT4G22770 141 / 4e-40 AT-hook AT hook motif DNA-binding family protein (.1) AT4G00200 138 / 4e-39 AT-hook AT hook motif DNA-binding family protein (.1) AT5G51590 139 / 1e-38 AT-hook AT hook motif DNA-binding family protein (.1) AT2G33620 110 / 2e-28 AT-hook AT hook motif DNA-binding family protein (.1.2.3.4) AT1G63470 108 / 1e-27 AT-hook AT hook motif DNA-binding family protein (.1) AT3G04590 105 / 1e-26 AT-hook AT hook motif DNA-binding family protein (.1.2) AT1G63480 103 / 1e-25 AT-hook AT hook motif DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031696 [exp] 288 / 8e-97 AT4G25320 260 / 1e-83 AT hook motif DNA-binding family protein (.1) Lus10038903 [exp] 167 / 5e-50 AT4G25320 257 / 4e-83 AT hook motif DNA-binding family protein (.1) Lus10015027 [exp] 163 / 2e-48 AT4G25320 267 / 5e-87 AT hook motif DNA-binding family protein (.1) Lus10030269 [exp] 147 / 5e-42 AT4G12080 294 / 7e-98 AT-hook motif nuclear-localized protein 1 (.1) Lus10004022 [exp] 146 / 6e-42 AT4G12080 288 / 1e-95 AT-hook motif nuclear-localized protein 1 (.1) Lus10004318 [exp] 139 / 3e-39 AT4G12080 305 / 3e-102 AT-hook motif nuclear-localized protein 1 (.1) Lus10030381 [exp] 127 / 2e-34 AT2G45850 284 / 3e-94 AT hook motif DNA-binding family protein (.1.2) Lus10037858 [exp] 123 / 3e-33 AT2G45850 278 / 1e-91 AT hook motif DNA-binding family protein (.1.2) Lus10000315 [exp] 117 / 8e-31 AT2G33620 228 / 4e-72 AT hook motif DNA-binding family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G129500 [exp] 185 / 6e-57 AT5G62260 202 / 2e-61 AT hook motif DNA-binding family protein (.1) Potri.001G115800 [exp] 159 / 3e-47 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.003G116500 [exp] 159 / 5e-47 AT4G12080 251 / 2e-81 AT-hook motif nuclear-localized protein 1 (.1) Potri.002G148600 [exp] 156 / 6e-46 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.014G070000 [exp] 154 / 4e-45 AT4G12080 233 / 2e-74 AT-hook motif nuclear-localized protein 1 (.1) Potri.014G082100 [exp] 130 / 7e-36 AT2G45850 229 / 8e-73 AT hook motif DNA-binding family protein (.1.2) Potri.002G005000 [exp] 130 / 1e-35 AT2G33620 228 / 8e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.005G256500 [exp] 130 / 3e-35 AT2G33620 196 / 2e-59 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.002G158200 [exp] 124 / 1e-33 AT2G45850 219 / 4e-69 AT hook motif DNA-binding family protein (.1.2) Potri.003G090900 [exp] 123 / 4e-33 AT4G17950 216 / 3e-66 AT hook motif DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [flax] [poplar] ALDC PF03479 [flax] [poplar] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Lus10031118 pacid=23151112 polypeptide=Lus10031118 locus=Lus10031118.g ID=Lus10031118.BGIv1.0 annot-version=v1.0 ATGGAGTCAACACAAGCAACGATTTCTTCAGGCGTTAGGGGAAATGAAGCTCCGAACCCGATTCCGAATACCATCCACTTCGGCAGCCCACCGGTGACGT CTCCGCCGCCGCCGCCGCCGGCTAGCGGCGTCGGAACGGATGGGAAGAAGAAAAGAGGTAGGCCGAGAAAGTATGGGCCAGACGGGAGATTGACAGCGAC GGCATTGTCGCCGACGCCGATATCGGCGTCCATTCCGATCTCCTCCAGAGATTTCTCCTCCTCGTCGTCGCCGGCGGCGCCTTGGAAGAGGGGAAGCAGA GGGAGAGGTTTACACTCCGTGAAGAAGCAGCAAAGAACCACCGAGTATGAAACATCAGGAGCTTTTGAGGGAAATGGAGTAGCTTACTCGGTAGGAGCGA ATTTCACACCCCATGTAATCACGGTGAATGCTGGCGAGGATGTTATGATGAAAGTCATGTCCTTTTCGCAGCAAAGCGCTGGAGCCGTATGCATTCTCTC TGCGAATGGGACGATCTCGAATGTCACGCTCCGCCGTCCTACTTCCTCTGGCGGTACATTGACATACGAGGGCCGATTCGAGATACTTTCGCTGTCGGGA TCACTGATGCCAACAGACAGCGGAGGGACGAAGATCAGATCAGGCGGGATGAGTGTTTCGTTGGCTGGTCCTGATGGTCGTGTTGTCGGTGGTGGCCTTG CCGGTCTTTTGATTGCTGCTGGTCCTGTCCAGGTCCAACTTCATATATAA
AA sequence Show only first row Show all	>Lus10031118 pacid=23151112 polypeptide=Lus10031118 locus=Lus10031118.g ID=Lus10031118.BGIv1.0 annot-version=v1.0 MESTQATISSGVRGNEAPNPIPNTIHFGSPPVTSPPPPPPASGVGTDGKKKRGRPRKYGPDGRLTATALSPTPISASIPISSRDFSSSSSPAAPWKRGSR GRGLHSVKKQQRTTEYETSGAFEGNGVAYSVGANFTPHVITVNAGEDVMMKVMSFSQQSAGAVCILSANGTISNVTLRRPTSSGGTLTYEGRFEILSLSG SLMPTDSGGTKIRSGGMSVSLAGPDGRVVGGGLAGLLIAAGPVQVQLHI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10031118 [exp]	0	1
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10039806 [exp]	1.0	0.9861
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Lus10007007 [exp]	1.4	0.9740
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Lus10006664 [exp]	3.9	0.9715
AT3G05390			unknown protein		Lus10029907 [exp]	4.0	0.9724
AT3G07425			unknown protein		Lus10009587 [exp]	4.0	0.9576
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10017285 [exp]	4.2	0.9708
					Lus10024615 [exp]	5.2	0.9736
					Lus10017269 [exp]	5.7	0.9480
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10041042 [exp]	6.0	0.9638
AT4G33590			unknown protein		Lus10041131 [exp]	6.9	0.9659

Compare expression of checked genes

Lus10031118 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.