Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51580 44 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031697 [exp] 128 / 1e-38 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G131300 [exp] 49 / 7e-08 ND / Potri.012G129400 [exp] 45 / 1e-06 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031119 pacid=23151032 polypeptide=Lus10031119 locus=Lus10031119.g ID=Lus10031119.BGIv1.0 annot-version=v1.0 ATGGTAGCTTTGAGTTTAACAATGGAGATCATCACTCAGGCTGCTTCCAACCCAATGTGGGTCTTCTTCTTCTGCAACATAATCATCGTCACCATCTTAG TCTCCTCAAAACCTCCTGAAGCTCTTGATCATCCTCAGCCTCATTATTCTCCAATTCGACACGTGTCCATCTCTGGAGCATCATCCTGTGGGACCGTTGA CAGGGATACTCTGTTTTCCAGCTGCGAAAACAGAGCACATTCAAAACCGGAATGTTTGAAGATCGAATTTGAAACACGCAAAGAGGATGATGTAGAAGAA GAAGAAGAGGTGATTGAAAAAGGGTGCTGCGATGAATTTGAGGAGGGTGGTGATGAGGATGAATTGAGGAAGAGGATTGAAGAGTTCATAGAGAAGACGA ACAAGGAATGGAGAGCTGAATTGATTCGGGGCTCGAAATTGGTTGGCTGA
AA sequence Show only first row Show all	>Lus10031119 pacid=23151032 polypeptide=Lus10031119 locus=Lus10031119.g ID=Lus10031119.BGIv1.0 annot-version=v1.0 MVALSLTMEIITQAASNPMWVFFFCNIIIVTILVSSKPPEALDHPQPHYSPIRHVSISGASSCGTVDRDTLFSSCENRAHSKPECLKIEFETRKEDDVEE EEEVIEKGCCDEFEEGGDEDELRKRIEEFIEKTNKEWRAELIRGSKLVG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10031119 [exp]	0	1
AT1G49230			RING/U-box superfamily protein...		Lus10005814 [exp]	13.8	0.6068
AT1G10820			Protein of unknown function (D...		Lus10029076 [exp]	19.4	0.5740
AT5G57450		ATXRCC3, XRCC3	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10029944 [exp]	31.5	0.5789
AT5G10560			Glycosyl hydrolase family prot...		Lus10019240 [exp]	32.9	0.5214
AT2G27930			PLATZ transcription factor fam...		Lus10036044 [exp]	43.8	0.5719
AT4G18230			unknown protein		Lus10024587 [exp]	52.4	0.5197
AT1G05270			TraB family protein (.1)		Lus10031571 [exp]	54.4	0.5354
AT1G20460			unknown protein		Lus10034569 [exp]	57.4	0.5006
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10029799 [exp]	61.5	0.4378
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10006987 [exp]	62.2	0.5193

Compare expression of checked genes

Lus10031119 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.