Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18100 224 / 1e-72 Ribosomal protein L32e (.1) AT5G46430 221 / 2e-71 Ribosomal protein L32e (.1.2) AT3G22660 215 / 4e-67 rRNA processing protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031698 [exp] 377 / 4e-130 AT3G22660 316 / 3e-108 rRNA processing protein-related (.1) Lus10036936 [exp] 291 / 1e-96 AT3G22660 281 / 1e-94 rRNA processing protein-related (.1) Lus10020410 [exp] 248 / 6e-82 AT4G18100 242 / 3e-84 Ribosomal protein L32e (.1) Lus10031699 [exp] 246 / 2e-81 AT4G18100 240 / 2e-83 Ribosomal protein L32e (.1) Lus10007541 [exp] 244 / 2e-80 AT4G18100 246 / 1e-85 Ribosomal protein L32e (.1) Lus10012195 [exp] 244 / 2e-80 AT4G18100 246 / 1e-85 Ribosomal protein L32e (.1) Lus10009591 [exp] 246 / 4e-80 AT4G18100 243 / 4e-83 Ribosomal protein L32e (.1) Lus10011970 [exp] 242 / 1e-79 AT4G18100 246 / 1e-85 Ribosomal protein L32e (.1) Lus10037050 [exp] 246 / 2e-79 AT3G22660 220 / 4e-71 rRNA processing protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G131200 [exp] 258 / 1e-83 AT3G22660 300 / 5e-102 rRNA processing protein-related (.1) Potri.001G353900 [exp] 230 / 4e-75 AT4G18100 227 / 4e-78 Ribosomal protein L32e (.1) Potri.014G191000 [exp] 230 / 4e-75 AT4G18100 227 / 4e-78 Ribosomal protein L32e (.1) Potri.002G249000 [exp] 227 / 6e-74 AT4G18100 226 / 5e-78 Ribosomal protein L32e (.1) Potri.011G078200 [exp] 226 / 2e-73 AT4G18100 225 / 2e-77 Ribosomal protein L32e (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05890 [flax] [poplar] Ebp2 Eukaryotic rRNA processing protein EBP2 PF01655 [flax] [poplar] Ribosomal_L32e Ribosomal protein L32
Representative CDS sequence Show only first row Show all	>Lus10031120 pacid=23151177 polypeptide=Lus10031120 locus=Lus10031120.g ID=Lus10031120.BGIv1.0 annot-version=v1.0 ATGGCGGTTCCTTTGCTGACTAAGAAGATCATCAAGAAGAGGGTCAAGGCGTTCAAGAGGCCCCAGAGTGACCGCAAGCACTGTGTCAAGGAGAACTGGA GAAGGCCAAAGGGTATCGACTCGAGGGTCCGAAGAAAGTTCAAGGGTGTCACGTTGATGCCCAACATCGGTTACGGCTCAGACAAGAAAACCCGACACTA TCTTCCCAATGGCTTCAAGAAGTTCGTCGTCCACAACGTTAAGGAGCTTGAAGTTCTGATGATGCACAACAGGACCTACTGTGCCGAGATCGCACATGAT GTCTCTACCAGGAAGAGGAAGGACATTGTTGAGCGTGCTGCGCAGTTGGACATTGTTGTTACCAACAAGCTTGCTAGGCTCAGGAGCCAGGAAGACGACT GCAAAAAACCAGAGCTCTGCTTAAACCCTTCTTTCCCCGCCGGTGACGCGCCAGCAGAAGCTCACGAATACAGCAAGCTGTTCCTCAACTGCTTCCGCTT ACATCTAAGCTCGAGTGCAGGTTCGTTTAACGGGGTCGGCCCCACCGCCAAGCTCCAAGAGATTGCTTGGCCCGAGGATGCCAGCTGGCTACACAAGCTC TCCCTCGAAATCAATCAGAAGCAAGAAGTTGACGTGAACGATGACCTCACTCGCGAGATGGCATTCTACACACAGGCATTAGAAGGCACGAGGAGGGCGT TCGAGAAGTTCGAAACCATGGGGCTCCCCTTCCTTCGGCCACCCGATTACTACGCCGAGATGGTGAAGTCGGACTCCCACATGGTGAAAATCAAGAACCG GCTCCTGGCCGAGAAAAGGAGCATGGAGGAAGCCGAGGAGAGGAGGAAAGCTCGTGAGGCGAAGAAGCTCTCGAAGGAGGTCCAAGCGCAGAAGCAGAAG GAGCGAGCCTCACAGAAGAAGGGGGAGATCGAGAGTGTTAAGAAGTGGATGAAGCAGAGGAAGCAGAGCGGGTTTGCTCCGGGGAAGGGTGACGAGCTCG ATCTCGATTTCATCGGAGGAGGAGAAGAGAAGAAGCCGTTTTCAAAAACAAACAAGCAGAGGCCAGGGGTGAGTCCCGGGGATAGGTCGGGTGGTAAAGG GAGGAAGCCATGGAAGAGCGGTAAGTCGGATAAGAAGAGGGATAGGAAGGAGTCGAAATTCGGGTTCGGAGGGAGAAAGGGGCTGAAGAAGCAGAACACT GCTGAAACTACTGATGATTTCAAAGGGTTTAAGAAGACTGGCGCTGAAGGGAACAAGAGAAGGAGGCAGTGA
AA sequence Show only first row Show all	>Lus10031120 pacid=23151177 polypeptide=Lus10031120 locus=Lus10031120.g ID=Lus10031120.BGIv1.0 annot-version=v1.0 MAVPLLTKKIIKKRVKAFKRPQSDRKHCVKENWRRPKGIDSRVRRKFKGVTLMPNIGYGSDKKTRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHD VSTRKRKDIVERAAQLDIVVTNKLARLRSQEDDCKKPELCLNPSFPAGDAPAEAHEYSKLFLNCFRLHLSSSAGSFNGVGPTAKLQEIAWPEDASWLHKL SLEINQKQEVDVNDDLTREMAFYTQALEGTRRAFEKFETMGLPFLRPPDYYAEMVKSDSHMVKIKNRLLAEKRSMEEAEERRKAREAKKLSKEVQAQKQK ERASQKKGEIESVKKWMKQRKQSGFAPGKGDELDLDFIGGGEEKKPFSKTNKQRPGVSPGDRSGGKGRKPWKSGKSDKKRDRKESKFGFGGRKGLKKQNT AETTDDFKGFKKTGAEGNKRRRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22660			rRNA processing protein-relate...		Lus10031120 [exp]	0	1
AT4G18100			Ribosomal protein L32e (.1)		Lus10031699 [exp]	1.0	0.9204
AT2G03510			SPFH/Band 7/PHB domain-contain...		Lus10004648 [exp]	1.4	0.8894
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10007376 [exp]	3.9	0.8865
AT3G11510			Ribosomal protein S11 family p...		Lus10014220 [exp]	4.0	0.8804
AT1G77940			Ribosomal protein L7Ae/L30e/S1...		Lus10027926 [exp]	4.9	0.8717
AT5G28060			Ribosomal protein S24e family ...		Lus10004123 [exp]	5.9	0.8760
AT3G10090			Nucleic acid-binding, OB-fold-...		Lus10029320 [exp]	6.3	0.8571
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Lus10016431 [exp]	7.5	0.8652
AT5G62440			Protein of unknown function (D...		Lus10035009 [exp]	7.7	0.8099
AT2G19740			Ribosomal protein L31e family ...		Lus10018032 [exp]	8.8	0.8659

Compare expression of checked genes

Lus10031120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.