Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62280 147 / 6e-44 Protein of unknown function (DUF1442) (.1) AT2G45360 72 / 4e-15 Protein of unknown function (DUF1442) (.1) AT3G60780 71 / 6e-15 Protein of unknown function (DUF1442) (.1) AT1G62840 43 / 6e-05 Protein of unknown function (DUF1442) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031701 [exp] 379 / 4e-135 AT5G62280 179 / 2e-56 Protein of unknown function (DUF1442) (.1) Lus10027191 [exp] 197 / 1e-63 AT5G62280 150 / 5e-45 Protein of unknown function (DUF1442) (.1) Lus10041061 [exp] 59 / 3e-10 AT5G62280 55 / 6e-09 Protein of unknown function (DUF1442) (.1) Lus10024565 [exp] 56 / 2e-09 AT2G45360 223 / 1e-73 Protein of unknown function (DUF1442) (.1) Lus10006163 [exp] 55 / 6e-09 AT5G62280 59 / 2e-10 Protein of unknown function (DUF1442) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G128900 [exp] 239 / 3e-80 AT5G62280 204 / 3e-66 Protein of unknown function (DUF1442) (.1) Potri.015G130500 [exp] 236 / 9e-79 AT5G62280 199 / 2e-64 Protein of unknown function (DUF1442) (.1) Potri.014G069000 [exp] 164 / 1e-50 AT5G62280 147 / 6e-44 Protein of unknown function (DUF1442) (.1) Potri.002G147200 [exp] 79 / 2e-18 AT5G62280 77 / 9e-18 Protein of unknown function (DUF1442) (.1) Potri.014G098800 [exp] 80 / 4e-18 AT2G45360 99 / 5e-25 Protein of unknown function (DUF1442) (.1) Potri.003G115200 [exp] 78 / 2e-17 AT2G45360 238 / 9e-80 Protein of unknown function (DUF1442) (.1) Potri.002G147100 [exp] 71 / 6e-15 AT3G60780 269 / 4e-92 Protein of unknown function (DUF1442) (.1) Potri.001G117600 [exp] 67 / 1e-13 AT2G45360 226 / 2e-75 Protein of unknown function (DUF1442) (.1) Potri.014G068900 [exp] 59 / 2e-10 AT2G45360 251 / 2e-85 Protein of unknown function (DUF1442) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07279 [flax] [poplar] DUF1442 Protein of unknown function (DUF1442)
Representative CDS sequence Show only first row Show all	>Lus10031122 pacid=23151070 polypeptide=Lus10031122 locus=Lus10031122.g ID=Lus10031122.BGIv1.0 annot-version=v1.0 ATGGCGTGTTGGTCAGCAGAGAATGCCACAAATGCCTACCTCAAAACCCTAAGAATGGGCCAGAAAGCGAAAGAGCCAGAAGCGGCCGAGTTCATCTCAG CATTAGCAGCCGGAAACAACTCCCAACTAATGGTCATCGCAGCCTCCACCACCTCGCCTTCCGTCACATCATCCACATTAGTAGCACTCGTGGCGGCCGC TTACCAAACCGGTGGTCGGGTAATTTGTATCCACCCAAACCACAATGAAACTGTTACGTCGTCCATCGGGCTCGAATTGGGTTGCCACGTGGAGTTTGTA TTCGGACCGGCCCAAGAGCTGCTCACGGCCCAATACAGCGACGCGGATTTCGTTGTCGTGGACTGCCACTTGGACGGCCACGAGAGGGTCTTGGAGGGAG TGCAAAACGGCAGGGGAATGGATCGAAATGGTATCGTTGTGGTGGGGTACAATGCGGGTAGTGATAAAGGGTACTCGTGGTGTTCAAGTGGGTGGAAGAC TCAGCTGTTGCCTATTGGGGAAGGGTTGCTGGTGATGAGGATGGCCCCGCCGGCGAGGAAAGGTCTGGCGGTTAGCGGCGGAGGGTGTAAGAGTAAGAGC CGGTGGGTTGTGAAGGTGGATGAATGCACCGGTGAAGAGCATGTGTTTAAGGTTAGGTTTCCGCATGGGAAACGGATTGAAGCTTAG
AA sequence Show only first row Show all	>Lus10031122 pacid=23151070 polypeptide=Lus10031122 locus=Lus10031122.g ID=Lus10031122.BGIv1.0 annot-version=v1.0 MACWSAENATNAYLKTLRMGQKAKEPEAAEFISALAAGNNSQLMVIAASTTSPSVTSSTLVALVAAAYQTGGRVICIHPNHNETVTSSIGLELGCHVEFV FGPAQELLTAQYSDADFVVVDCHLDGHERVLEGVQNGRGMDRNGIVVVGYNAGSDKGYSWCSSGWKTQLLPIGEGLLVMRMAPPARKGLAVSGGGCKSKS RWVVKVDECTGEEHVFKVRFPHGKRIEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62280			Protein of unknown function (D...		Lus10031122 [exp]	0	1
AT3G52440	DOF	AtDof3,5	Dof-type zinc finger DNA-bindi...		Lus10013586 [exp]	1.0	0.8716
AT5G21050			unknown protein		Lus10019547 [exp]	1.7	0.8447
AT1G04040			HAD superfamily, subfamily III...		Lus10023731 [exp]	2.8	0.8542
AT2G17080			Arabidopsis protein of unknown...		Lus10023962 [exp]	3.2	0.8355
AT5G52280			Myosin heavy chain-related pro...		Lus10029303 [exp]	3.5	0.8378
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10007588 [exp]	3.5	0.8318
AT1G57610			Protein of unknown function (D...		Lus10019127 [exp]	3.6	0.8119
AT5G47520		AtRABA5a	RAB GTPase homolog A5A (.1)		Lus10039052 [exp]	5.7	0.8076
					Lus10026124 [exp]	7.1	0.8056
AT2G21950		SKIP6	SKP1 interacting partner 6 (.1...		Lus10030883 [exp]	10.0	0.7597

Compare expression of checked genes

Lus10031122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.