Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51560 800 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G45340 709 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G22730 620 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G67510 208 / 8e-58 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 209 / 1e-56 Leucine-rich receptor-like protein kinase family protein (.1) AT1G66830 204 / 1e-56 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 208 / 2e-56 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G25560 194 / 3e-53 NIK2 NSP-interacting kinase 2 (.1.2.3) AT4G22130 189 / 5e-51 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT5G62710 186 / 8e-51 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031703 [exp] 1296 / 0 AT5G51560 851 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004032 [exp] 631 / 0 AT2G45340 747 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004333 [exp] 630 / 0 AT4G22730 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10028916 [exp] 617 / 0 AT4G22730 749 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030279 [exp] 534 / 0 AT2G45340 648 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031702 [exp] 315 / 2e-104 AT5G51560 258 / 2e-83 Leucine-rich repeat protein kinase family protein (.1) Lus10034350 [exp] 199 / 6e-55 AT5G16000 1018 / 0.0 NSP-interacting kinase 1 (.1) Lus10012877 [exp] 199 / 1e-53 AT3G56370 1162 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030526 [exp] 198 / 2e-53 AT3G56370 1170 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G130100 [exp] 918 / 0 AT5G51560 940 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G128700 [exp] 886 / 0 AT5G51560 906 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G068700 [exp] 738 / 0 AT2G45340 831 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G147000 [exp] 714 / 0 AT2G45340 808 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G117800 [exp] 674 / 0 AT4G22730 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G115100 [exp] 653 / 0 AT4G22730 788 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G108000 [exp] 222 / 2e-63 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1) Potri.006G108600 [exp] 217 / 7e-60 AT5G01890 1115 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.004G108200 [exp] 212 / 8e-60 AT5G16000 1006 / 0.0 NSP-interacting kinase 1 (.1) Potri.010G121700 [exp] 198 / 2e-54 AT1G68400 760 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10031123 pacid=23151029 polypeptide=Lus10031123 locus=Lus10031123.g ID=Lus10031123.BGIv1.0 annot-version=v1.0 ATGGCGATTGCTTCACTATTCATCTTCATTCTATTCTTCATTCAAGCTGAATCCTCCGCCAACCCAGAGCTGAAGCCCTTGCTGGAGTTCAAATCAGCGC TGGACCCGGAGTCCAAGTTTCTGACCTCGTGGAAAGTCGACGGGAACCCGTGCGACGGTTCCTTTGAAGGCGTCGGGTGCAATGAACAGGGTCAAGTTGC TAACATCTCGTTGCAAGGGAAGGGCCTTAAGGGGGAGATTTCACCGGCGGTTGGGAGCTTGAAGAACCTGACTGGGTTGTACTTGCATTACAATGCCTTG TGCGGTGAAGTCCCTGCAGAAGTTGGGAACTTGACTGAGCTCGTTGACTTGTACTTGAACGTCAACAATCTCTCCGGCCAAATCCCGCCTCAGATTGGGA ATTTGGGTAAACTCCAAGTGTTGCAGTTATGCTACAACCAGTTCACTGGAAGTGTACCAGTACAACTTGGTACATTGAAGAAGCTTACCGTTTTAGCGCT TCAGTCGAACCGATTCAGCGGTGCGATCCCAGCGAATCTGGGGAATCTTGGTATGCTGATGCGGCTCGATTTGAGCTTCAACCATTTCTTCGGCTCGATT CCAACGAAGCTCGCCGATGCTCCGGTGCTCGAGTCTCTAGACATCCGTAATAACACCTTCTCTGGCAATGTACCCCTTGCTCTAAAGAGGCTAAACGAAG GCTTCCTATTTGCAAACAACCCGGGACTATGCGGGTCGGGTTTCATGGATCTAAGGGCATGCAACTCATCAGAAGGGACAAATCCAAACAGACCAGAAGC ATTCGGACAAGGCGGGCAACCAACAAAAACACGTGAAATCCCCGAAACAGCAGACTTAACCCTCCCTTGCAGCATCAACCAAACCAATTGCTCAAACCCA TCAGCAAGGAACCACCACCACCAAGCATCATTGTTCATCATAGGTTCGGTTTTTGTAACACTAACATTGCTAGCCACGTCAGCACTCTCCTACACTCACT ACCGCCGCAGGAAACAGAAGCTCTCTGACTCAGCCAACCTTGACCAGTCAACTTCTGATCATCAACAACCATCAGAGTACAGGAAGAACGGGTCTCCGTT GATCAGCCTCGAGTACCCGAACGGGTGGGACCCGCTGGCTGACCATGGAAGGAGACATAATAACAATGCTGCTAGTACTAATGGTGATGCATTGTTCCAT AGCTTCAAGTTCAACTTGGAGGAGATCGAGACCGCGACCCAGTACTTCTCCGAGTCGAACGTGTTGGGAGGGGGAAAGAAGTTCAAATTCTCTGCTACTT ATAAAGGAATCCTGAGAGATGGATCTTCTGTTGCTGTGAAGTGCATTAGTAAGAGCAGCTGCAAGTCTGATGAGTCAGAGTTTCTGAGAGGGTTGAATGT ATTGACTTTGTTGGGTCATGAAAATTTGGTGAGGTTTCGAGGGTTTTGTTGCTCGAGGGGACGCGGCGAATGCTTCGTGGTGTATGATTTTGTGCCTAAT GGGAACTTGATGGGGCATTTGGATGTTGCTGCTGAGGATGATGGTGAGCTTGTTCTTGAATGGTCCACTAGAGTCTCCATTGTTAAAGGCATAGCCAAAG GCATAGCGTATCTGCACAGCTACAAACCAAACAAGCCATCAATAATCCACCAGAACATAACAGCAGAAAAGATCCTGATAGACAAAAGGTACAACCCAAT GGTATCAGGCTCAGGTCTGCAGAGCCTCCTGACAAACGACGCCGTTTTCTCAGCACTCAAGGCCAGTGCAGCAATGGGGTACATGGCTCCGGAGTATTCC ACCACGGGGAAGTTCACGGACAAGAGCGACGTGTACGCATTCGGAGTGGTCGTGTTCCAGGTGCTCTCCGGGAAGCGTAAGGTCTCGAATCTGGTCCGGA TGGGTGCTGAGGCGTGTCGTTTCGAGGACTACTTGGATGCCAATCTTAAAGGGAGGTTCTTTGAGTATGAAGCTGCTAAGCTTGCTAGGATTGCCTGGCT TTGTACCCATGAATCCCCTGTTGAGAGGCCTTCTATGGAAGCTGTTGTTCAGGAATTGGGGAACTGTAGTAGCTGCATTTAG
AA sequence Show only first row Show all	>Lus10031123 pacid=23151029 polypeptide=Lus10031123 locus=Lus10031123.g ID=Lus10031123.BGIv1.0 annot-version=v1.0 MAIASLFIFILFFIQAESSANPELKPLLEFKSALDPESKFLTSWKVDGNPCDGSFEGVGCNEQGQVANISLQGKGLKGEISPAVGSLKNLTGLYLHYNAL CGEVPAEVGNLTELVDLYLNVNNLSGQIPPQIGNLGKLQVLQLCYNQFTGSVPVQLGTLKKLTVLALQSNRFSGAIPANLGNLGMLMRLDLSFNHFFGSI PTKLADAPVLESLDIRNNTFSGNVPLALKRLNEGFLFANNPGLCGSGFMDLRACNSSEGTNPNRPEAFGQGGQPTKTREIPETADLTLPCSINQTNCSNP SARNHHHQASLFIIGSVFVTLTLLATSALSYTHYRRRKQKLSDSANLDQSTSDHQQPSEYRKNGSPLISLEYPNGWDPLADHGRRHNNNAASTNGDALFH SFKFNLEEIETATQYFSESNVLGGGKKFKFSATYKGILRDGSSVAVKCISKSSCKSDESEFLRGLNVLTLLGHENLVRFRGFCCSRGRGECFVVYDFVPN GNLMGHLDVAAEDDGELVLEWSTRVSIVKGIAKGIAYLHSYKPNKPSIIHQNITAEKILIDKRYNPMVSGSGLQSLLTNDAVFSALKASAAMGYMAPEYS TTGKFTDKSDVYAFGVVVFQVLSGKRKVSNLVRMGAEACRFEDYLDANLKGRFFEYEAAKLARIAWLCTHESPVERPSMEAVVQELGNCSSCI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51560			Leucine-rich repeat protein ki...		Lus10031123 [exp]	0	1
AT2G45260			Plant protein of unknown funct...		Lus10008587 [exp]	2.0	0.9566
AT1G67040			unknown protein		Lus10033565 [exp]	5.5	0.9463
AT5G51560			Leucine-rich repeat protein ki...		Lus10031703 [exp]	5.7	0.9557
AT5G59010			Protein kinase protein with te...		Lus10040719 [exp]	6.4	0.9042
AT1G54690		HTA3 ,G-H2AX ,G...	histone H2A 3, GAMMA H2AX, gam...		Lus10003750 [exp]	6.6	0.9389
AT2G45340			Leucine-rich repeat protein ki...		Lus10004032 [exp]	7.4	0.9272
AT5G19340			unknown protein		Lus10041215 [exp]	8.1	0.9383
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10000986 [exp]	8.4	0.9389
AT4G36180			Leucine-rich receptor-like pro...		Lus10042177 [exp]	11.2	0.9347
AT4G39790			Protein of unknown function (D...		Lus10041710 [exp]	13.0	0.9314

Compare expression of checked genes

Lus10031123 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.