Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00100 266 / 4e-93 PFL2, ATRPS13A POINTED FIRST LEAF 2, ribosomal protein S13A (.1) AT3G60770 263 / 3e-92 Ribosomal protein S13/S15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031704 [exp] 282 / 1e-99 AT4G00100 267 / 9e-94 POINTED FIRST LEAF 2, ribosomal protein S13A (.1) Lus10038908 [exp] 282 / 2e-99 AT4G00100 289 / 4e-102 POINTED FIRST LEAF 2, ribosomal protein S13A (.1) Lus10027192 [exp] 282 / 2e-99 AT4G00100 289 / 4e-102 POINTED FIRST LEAF 2, ribosomal protein S13A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G130000 [exp] 273 / 5e-96 AT4G00100 283 / 7e-100 POINTED FIRST LEAF 2, ribosomal protein S13A (.1) Potri.002G146800 [exp] 269 / 2e-94 AT3G60770 287 / 1e-101 Ribosomal protein S13/S15 (.1) Potri.012G128600 [exp] 267 / 1e-93 AT4G00100 288 / 6e-102 POINTED FIRST LEAF 2, ribosomal protein S13A (.1) Potri.014G068600 [exp] 266 / 2e-93 AT3G60770 291 / 4e-103 Ribosomal protein S13/S15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0600 [flax] [poplar] S15_NS1 PF00312 [flax] [poplar] Ribosomal_S15 Ribosomal protein S15 CL0600 [flax] [poplar] PF08069 [flax] [poplar] Ribosomal_S13_N Ribosomal S13/S15 N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10031124 pacid=23150984 polypeptide=Lus10031124 locus=Lus10031124.g ID=Lus10031124.BGIv1.0 annot-version=v1.0 ATGGGTCGCATGCACTCCAGAGGTAAGGGTATTTCAGCTTCAGCTCTGCCCTACAAGAGAACTCCACCGAGCTGGCTCAAGATCTCTTCTCAGGATGTGG AGGAGAACATCTGCAAGTTTGCGAAGAAGGGTTTGACTCCATCTCAGATTGGTGTCATCCTTCGTGACTCTCATGGTATTGCTCAGGTCAGGAGTGTGAC CGGTAGCAAGATCCTCCGCATCCTCAAAGCAAGTGGACTTGCCCCTGAAATCCCTGAGGATCTGTACCATCTCATCAAGAAGGCCGTGGCCATCAGAAAG CATTTGGAGAGGAACAGGAAGGACAAGGACTCCAAGTTCCGTTTGATTCTTGTTGAGAGCAGAATCCACAGGCTGGCCCGCTACTACAAGAAGACCAAGA AGCTTCCCCCAGTCTGGAAATAG
AA sequence Show only first row Show all	>Lus10031124 pacid=23150984 polypeptide=Lus10031124 locus=Lus10031124.g ID=Lus10031124.BGIv1.0 annot-version=v1.0 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKASGLAPEIPEDLYHLIKKAVAIRK HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Lus10031124 [exp]	0	1
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10005286 [exp]	2.2	0.9782
AT1G74050			Ribosomal protein L6 family pr...		Lus10039084 [exp]	3.7	0.9765
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10005441 [exp]	4.5	0.9669
AT3G17465		RPL3P	ribosomal protein L3 plastid (...		Lus10017709 [exp]	4.6	0.9651
AT4G34110		PABP2, PAB2, AT...	ARABIDOPSIS POLY\(A\) BINDING ...		Lus10010370 [exp]	4.9	0.9609
AT1G74050			Ribosomal protein L6 family pr...		Lus10039083 [exp]	5.5	0.9740
AT3G54470			uridine 5'-monophosphate synth...		Lus10039539 [exp]	7.7	0.9669
AT2G41840			Ribosomal protein S5 family pr...		Lus10030130 [exp]	8.5	0.9621
AT3G57490			Ribosomal protein S5 family pr...		Lus10027358 [exp]	8.8	0.9662
AT2G28600			P-loop containing nucleoside t...		Lus10043421 [exp]	10.6	0.9624

Compare expression of checked genes

Lus10031124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.