Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00110 544 / 0 GAE3 UDP-D-glucuronate 4-epimerase 3 (.1) AT1G02000 541 / 0 GAE2 UDP-D-glucuronate 4-epimerase 2 (.1) AT2G45310 537 / 0 GAE4 UDP-D-glucuronate 4-epimerase 4 (.1) AT3G23820 523 / 0 GAE6 UDP-D-glucuronate 4-epimerase 6 (.1) AT4G12250 517 / 0 GAE5 UDP-D-glucuronate 4-epimerase 5 (.1) AT4G30440 482 / 5e-170 GAE1 UDP-D-glucuronate 4-epimerase 1 (.1) AT3G53520 87 / 1e-18 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT2G28760 86 / 2e-18 UXS6 UDP-XYL synthase 6 (.1.2.3) AT1G12780 84 / 7e-18 ATUGE1, UGE1 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) AT5G59290 83 / 3e-17 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009288 [exp] 542 / 0 AT4G00110 704 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10015876 [exp] 538 / 0 AT4G00110 751 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10030281 [exp] 531 / 0 AT4G00110 753 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10032391 [exp] 530 / 0 AT1G02000 620 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Lus10000787 [exp] 530 / 0 AT4G00110 731 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10016640 [exp] 527 / 0 AT3G23820 746 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Lus10022552 [exp] 521 / 0 AT3G23820 742 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Lus10015496 [exp] 500 / 5e-177 AT4G30440 764 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10008893 [exp] 495 / 6e-175 AT4G30440 767 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G128200 [exp] 550 / 0 AT1G02000 544 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.014G068400 [exp] 535 / 0 AT1G02000 714 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.002G146500 [exp] 532 / 0 AT1G02000 724 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.017G059100 [exp] 531 / 0 AT3G23820 724 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.001G320000 [exp] 527 / 0 AT3G23820 714 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.003G114600 [exp] 512 / 0 AT4G12250 587 / 0.0 UDP-D-glucuronate 4-epimerase 5 (.1) Potri.018G100400 [exp] 478 / 4e-168 AT4G30440 771 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.006G178500 [exp] 471 / 3e-165 AT4G30440 757 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.002G116750 [exp] 152 / 7e-45 AT2G45310 209 / 6e-67 UDP-D-glucuronate 4-epimerase 4 (.1) Potri.003G123700 [exp] 89 / 3e-19 AT1G12780 641 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10031127 pacid=23151120 polypeptide=Lus10031127 locus=Lus10031127.g ID=Lus10031127.BGIv1.0 annot-version=v1.0 ATGGACAGATCAATGAACCCTAACAGCACCAGAACCCGCCACCAACTGTCCAAAACAAAGCTCTTCTGGGTCTGCATTTTCGTCGCCTTCCTCCTACTCT TTTCCCTCCACGCGCCGCTTCTCCCCCACCGTCTCCACTCCTCTGACTCCAACCACCGCCGCCGCATCCTCCGCTCCCCTGACTGGGAAACCCGCGTGAT CAAATCCTCCACCCCCAAATCCCAATCCACCCATCGAATCCTTGTCACCGGCGCCGCCGGCTTCGTCGGCTCCCACGTCTCCGTCGCCCTCCGCCGCCGC GGCGACGGCGTAGTCGGCCTCGACAACTTCAACTCCTACTATGACCCTTCCCTCAAACAATCCCGCCGCTCCTTCCTCGATCGCGAAGCGATCTATATCG TCGAGGGCGACATAAACGACGCTGCATTGCTCAGAACGCTCTTCGGATTAGTCCCCTTCACCCACGTCGTCCACCTCGCCGCTCAGGCGGGAGTCCGTTA CGCGATGAAGAATCCGGCGTCGTACATACACAGCAACATCGCCGGGTTTGTATCAATTCTCGAAGCTTCCAAGTCTGCGAATCCCCAGCCGGCTATCGTC TGGGCATCGTCAAGCTCCGTCTATGGTTTAAACACGAAAGTCCCGTTCTCCGAGGACGACCGGACCGATCAGCCGTCAAGCCTATACGCCGCGACAAAAA AAGCCGGCGAGGAAATAGCCCATACTTACAACCACATATATGGGCTTTCAATCACGGGCCTAAGATTCTTCACCGTATATGGGCCTTGGGGTAGGCCCGA TATGGCCTACTTCTTTTTCACTAAGGACATGCTCAAGGGAAATTCTATTAACGTCTACGAGGGGCCCAATGGGTTCACGGTGGCTAGGGATTTCACTTAC ATCGACGATATAGTGAAGGGGTGTTTGGCGGCGGTGGACACGGTGGGGAAGAGCACCGGCGGCCAAGGAGAAGCTCAGTTGAGGGTTTATAACTTGGGGA ATACTTCGCCGGTTCCGGTGGGGGAGCTGGTGAGTATATTGGAGAAGCTGTTGAAGGTTAAGGCGAAGAAGAAGGTGACGCCGATGCCGGAGAACGGCGA CGTTTTGTTCACTCATGCGAATGTTAGTTTGGCGAAGAGGGATTTTGGGTACGAGCCGACGACAGATTTGGAAACTGGGTTGAAGAAGTTTGTTGAGTGG TACTTGGATTACTATCGGCTGTAA
AA sequence Show only first row Show all	>Lus10031127 pacid=23151120 polypeptide=Lus10031127 locus=Lus10031127.g ID=Lus10031127.BGIv1.0 annot-version=v1.0 MDRSMNPNSTRTRHQLSKTKLFWVCIFVAFLLLFSLHAPLLPHRLHSSDSNHRRRILRSPDWETRVIKSSTPKSQSTHRILVTGAAGFVGSHVSVALRRR GDGVVGLDNFNSYYDPSLKQSRRSFLDREAIYIVEGDINDAALLRTLFGLVPFTHVVHLAAQAGVRYAMKNPASYIHSNIAGFVSILEASKSANPQPAIV WASSSSVYGLNTKVPFSEDDRTDQPSSLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTKDMLKGNSINVYEGPNGFTVARDFTY IDDIVKGCLAAVDTVGKSTGGQGEAQLRVYNLGNTSPVPVGELVSILEKLLKVKAKKKVTPMPENGDVLFTHANVSLAKRDFGYEPTTDLETGLKKFVEW YLDYYRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10031127 [exp]	0	1
AT1G12950		RSH2	root hair specific 2 (.1)		Lus10036853 [exp]	4.2	0.8466
					Lus10021792 [exp]	7.9	0.8636
AT3G24140	bHLH	bHLH097, FMA	FAMA, basic helix-loop-helix (...		Lus10007139 [exp]	8.7	0.8536
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10014089 [exp]	9.2	0.8472
AT3G05510			Phospholipid/glycerol acyltran...		Lus10029891 [exp]	10.3	0.8709
AT3G15570			Phototropic-responsive NPH3 fa...		Lus10030390 [exp]	13.4	0.8353
AT3G23530			Cyclopropane-fatty-acyl-phosph...		Lus10023741 [exp]	16.4	0.8389
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Lus10003564 [exp]	17.0	0.8068
AT5G18910			Protein kinase superfamily pro...		Lus10034000 [exp]	20.3	0.7583
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Lus10026681 [exp]	20.4	0.8396

Compare expression of checked genes

Lus10031127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.