Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60750 1088 / 0 Transketolase (.1.2) AT2G45290 1085 / 0 Transketolase (.1) AT3G21500 53 / 7e-07 DXPS1 1-deoxy-D-xylulose 5-phosphate synthase 1 (.1.2) AT4G15560 44 / 0.0004 AtCLA1, DXS, DXPS2, DEF, CLA1 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031708 [exp] 1235 / 0 AT3G60750 1255 / 0.0 Transketolase (.1.2) Lus10030283 [exp] 963 / 0 AT2G45290 1121 / 0.0 Transketolase (.1) Lus10000789 [exp] 960 / 0 AT2G45290 1106 / 0.0 Transketolase (.1) Lus10004750 [exp] 922 / 0 AT2G45290 1054 / 0.0 Transketolase (.1) Lus10012724 [exp] 46 / 8e-05 AT4G15560 1030 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G146300 [exp] 1088 / 0 AT2G45290 1180 / 0.0 Transketolase (.1) Potri.014G068200 [exp] 1078 / 0 AT2G45290 1174 / 0.0 Transketolase (.1) Potri.010G224600 [exp] 340 / 3e-106 AT3G60750 764 / 0.0 Transketolase (.1.2) Potri.007G058500 [exp] 45 / 0.0003 AT4G15560 999 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.008G196500 [exp] 43 / 0.0009 AT4G15560 1207 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.010G015200 [exp] 43 / 0.001 AT4G15560 1227 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF02779 [flax] [poplar] Transket_pyr Transketolase, pyrimidine binding domain CL0591 [flax] [poplar] TKC_like PF02780 [flax] [poplar] Transketolase_C Transketolase, C-terminal domain CL0254 [flax] [poplar] THDP-binding PF00456 [flax] [poplar] Transketolase_N Transketolase, thiamine diphosphate binding domain
Representative CDS sequence Show only first row Show all	>Lus10031128 pacid=23151087 polypeptide=Lus10031128 locus=Lus10031128.g ID=Lus10031128.BGIv1.0 annot-version=v1.0 ATGGCGGCTGCTTCAGCTTCTTCCACGCTCTCCCTCCTCTCGCGCTCAATCCCCAACCACAATTCACCCCTCCCCGCTTCCTCTTCCCACTCCCCCCTCC TCTCCATCCCTTCCTCCGCCAGAGCCGCCGTCTACCGCCGCCGCCGATTGACCTCCTCCGCTGTAATCCGAGCTACGGCTGTGGAAACCCTGCAGAAGGC TGACACGGAGCTGGTGGACAAGTCGGTGAACTCGATTAGGTTCCTTGCGATCGATGCCGTTGAAAAGGCCAACTCGGGTCACCCGGGTTTGCCCATGGGT TGCGCCCCGATGGGTCACATTCTTTACGACGAGGTCATGAGGTATAACCCGAAGAACCCTTACTGGTTCAACCGAGATCGGTTCGTTTTGTCCGCCGGTC ACGGTTGCATGTTGCAGTACGCCCTTCTCCACCTCGCCGGCTACGACAGCGTCAAGGAGGAAGATTTGAAGCAATTTCGTCAATGGGGGAGCAGAACACC TGGACATCCTGAGAACTTTGAAACTCCTGGAGTTGAAGTGACCACTGGTCCATTGGGGCAAGGTATTGCCAATGCAGTTGGATTAGCTCTAGCAGAGAAG CATTTGGCTGCTAGATACAACAAACCCGACGCAGAGATCGTCGATCACTACACGTATGTGATATTGGGAGATGGATGTCAAATGGAAGGGATCTCGAACG AAGCATGTTCGATAGCGGGGCATTGGGGACTTGGCAAGCTCATTGCTTTATACGACGACAACCACATCTCGATTGATGGAGATACCGAGATTGCCTTCAC CGAGAGCGTTGATACTCGCTTCGAGGCGCTAGGATGGCACGTGATCTGGGTGAAGAATGGTAACAATGGTTACGACGAGATCAGAGCTGCTATCGAGGAG GCCAAGGCTGTCAAGGACAAGCCTACTATGATTAAGGTTACTACAACGATCGGGTTCGGTTCCCCAAACAAAGCAAACTCATACAGTGTCCATGGAGCTG CATTAGGCACTTCGGAAGTCGAAGCCACAAGGAAGAATCTCGGCTGGCCTTACGAGCCGTTCCATGTGCCAGAGGATGTCAAGAAGCATTGGAGCCGCCA CACCCCTGCTGGAGCTGCACTCGAATCCGAATGGAACGCAAAGTTCGCTGAGTACGCAAAGAAGTACCCGGAAGAAGCTGCTGAGTTGAAGTCCATCACC ACCGGCGAATTCCCAGCTGGTTGGGAATCAGCACTTCCGGCCACTCCCGAGGAGCGTAACCTCCGATTCGGAGTAAGAGAGCACGCAATGGGAGCCATCT GCAACGGGATAGCACTCCACAGCCCCGGATTTGTTCCTTACTGCGCAACATTCTTCGTCTTCACCGACTACATGAGAGCAGCAATAAGGATCTCAGCCTT ATCCGAAGCTCCAGTCATCTACGTGATGACCCACGACTCGATCGGACTGGGAGAAGACGGCCCAACCCATCAGCCCATCGAGCACGTCGCGAGCTTCAGA GCGATGCCTAACATCTACATGTTCAGGCCAGCAGACGGGAATGAGACAGCCGGAGCCTACAAGGTAGCGGTCGAGAGCAGGAAGACTCCGTCGATTCTCG CACTTTCGAGACAGAAGCTTCCGCACCTTCCAGGGACATCGATCGAGGGAGTTGCCAAGGGAGGGTACACGATCTCGGATGATTCCACCGGAAACAAGCC TGATGTCATCCTTGTTGGGACGGGTTCGGAGCTTGAGATTGCTGTGAAAGCCGGTGACTTGTTGAGGAAGGAAGGGAAGACCGTTCGTGTTGTGTCGTTG GTTTCGTGGGAGCTTTACGAGAAGCAGTCTGATGAGTATAAGGAGAGTGTTTTCCCAGCTGGTGTGACTGCTAGAGTGAGTATCGAGGCGGCTTCGACTT TCGGATGGCATAAGATTGTTGGGGATAAGGGGAAAGCCATTGGTATTGATAAGTTTGGTGCAAGTGCTCCTGCTGGGAAGATCTATAAGGAGTATGGGAT TACTGTGGAGGCTGTTGTGGAAGCTGCTAAATCTATGTTCTAA
AA sequence Show only first row Show all	>Lus10031128 pacid=23151087 polypeptide=Lus10031128 locus=Lus10031128.g ID=Lus10031128.BGIv1.0 annot-version=v1.0 MAAASASSTLSLLSRSIPNHNSPLPASSSHSPLLSIPSSARAAVYRRRRLTSSAVIRATAVETLQKADTELVDKSVNSIRFLAIDAVEKANSGHPGLPMG CAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEK HLAARYNKPDAEIVDHYTYVILGDGCQMEGISNEACSIAGHWGLGKLIALYDDNHISIDGDTEIAFTESVDTRFEALGWHVIWVKNGNNGYDEIRAAIEE AKAVKDKPTMIKVTTTIGFGSPNKANSYSVHGAALGTSEVEATRKNLGWPYEPFHVPEDVKKHWSRHTPAGAALESEWNAKFAEYAKKYPEEAAELKSIT TGEFPAGWESALPATPEERNLRFGVREHAMGAICNGIALHSPGFVPYCATFFVFTDYMRAAIRISALSEAPVIYVMTHDSIGLGEDGPTHQPIEHVASFR AMPNIYMFRPADGNETAGAYKVAVESRKTPSILALSRQKLPHLPGTSIEGVAKGGYTISDDSTGNKPDVILVGTGSELEIAVKAGDLLRKEGKTVRVVSL VSWELYEKQSDEYKESVFPAGVTARVSIEAASTFGWHKIVGDKGKAIGIDKFGASAPAGKIYKEYGITVEAVVEAAKSMF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45290			Transketolase (.1)		Lus10031128 [exp]	0	1
AT3G60750			Transketolase (.1.2)		Lus10031708 [exp]	1.0	0.9790
AT5G51110			Transcriptional coactivator/pt...		Lus10022731 [exp]	2.4	0.9503
AT4G02790		EMB3129	EMBRYO DEFECTIVE 3129, GTP-bin...		Lus10014672 [exp]	6.3	0.9290
AT1G12900		GAPA-2	glyceraldehyde 3-phosphate deh...		Lus10041502 [exp]	6.7	0.9181
AT1G12900		GAPA-2	glyceraldehyde 3-phosphate deh...		Lus10012591 [exp]	6.9	0.9321
AT3G59400		GUN4	GENOMES UNCOUPLED 4, enzyme bi...		Lus10033819 [exp]	6.9	0.9245
AT1G23740		AOR	alkenal/one oxidoreductase, Ox...		Lus10030615 [exp]	8.5	0.9188
AT3G59400		GUN4	GENOMES UNCOUPLED 4, enzyme bi...		Lus10018961 [exp]	9.9	0.9213
AT5G04900		NOL	NYC1-like (.1)		Lus10033408 [exp]	12.0	0.9133
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Lus10018528 [exp]	12.6	0.9171

Compare expression of checked genes

Lus10031128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.