Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06220 1741 / 0 GFA1, CLO, MEE5 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT5G25230 1666 / 0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT1G56070 607 / 0 LOS1, AT1G56075.1 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT3G12915 586 / 0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT3G22980 243 / 7e-67 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT5G39900 97 / 2e-20 Small GTP-binding protein (.1) AT5G08650 91 / 2e-18 Small GTP-binding protein (.1) AT5G13650 89 / 1e-17 SVR3 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) AT2G31060 87 / 2e-17 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) AT1G62750 84 / 4e-16 ATSCO1, ATSCO1/CPEF-G SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034111 [exp] 1963 / 0 AT1G06220 1761 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10043477 [exp] 959 / 0 AT1G06220 828 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10043478 [exp] 761 / 0 AT1G06220 729 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10031201 [exp] 501 / 1e-163 AT1G56070 1415 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031763 [exp] 494 / 2e-161 AT1G56070 1418 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031186 [exp] 379 / 1e-121 AT1G56070 902 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10004749 [exp] 369 / 6e-112 AT3G22980 1376 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031779 [exp] 333 / 2e-100 AT3G12915 760 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10031185 [exp] 160 / 1e-43 AT1G56070 504 / 6e-175 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G114900 [exp] 1817 / 0 AT1G06220 1710 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.006G190600 [exp] 1801 / 0 AT1G06220 1744 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.007G065700 [exp] 605 / 0 AT1G56070 1623 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065600 [exp] 605 / 0 AT1G56070 1620 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.005G098100 [exp] 600 / 0 AT1G56070 1648 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.009G152500 [exp] 345 / 9e-103 AT3G22980 1521 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.003G113500 [exp] 91 / 2e-18 AT1G62750 1310 / 0.0 SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1) Potri.001G305300 [exp] 89 / 5e-18 AT5G08650 1063 / 0.0 Small GTP-binding protein (.1) Potri.006G053000 [exp] 89 / 6e-18 AT5G13650 1123 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Potri.013G123700 [exp] 88 / 1e-17 AT2G31060 1084 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [flax] [poplar] EFTPs PF03144 [flax] [poplar] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0437 [flax] [poplar] EF-G_C PF00679 [flax] [poplar] EFG_C Elongation factor G C-terminus CL0329 [flax] [poplar] S5 PF03764 [flax] [poplar] EFG_IV Elongation factor G, domain IV CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain
Representative CDS sequence Show only first row Show all	>Lus10031129 pacid=23150941 polypeptide=Lus10031129 locus=Lus10031129.g ID=Lus10031129.BGIv1.0 annot-version=v1.0 ATGGATGACAATCTGTATGATGAGTTTGGGAATTACATTGGTCCCGAAATCGAGTCTGACCATGAGAGTGACGAGGAGGAAGATGAAGACCTTCAAGAAA GGCCTCAGGCTGCATCCGATGATGATGATGAGGAGGCAGGGAATGCTGCTTCCAATGGTTGGCTGACGGCATCTGGCGATGTAGATATGGACAATCAGAT TGTCCTGGCGGAGGACAAGAAGTACTACCCTACAGCCGAAGAGGTTTACGGTGACGACGTGGAAACTTTGGTAATGGATGAGGATGAGCTTCCGCTTGAG CAGCCAATCATTAAACCTGTAAGGGACATCAAGATGGAGGTTGGGGTTAAGGACTCCTCAACTTTCGTCTCTAGCCAATTTCTTGTCGGTCTAATGTCGA ATCCCTCCCTTATTCGCAATGTTGCTCTTGTTGGACACATTCATCATGGGAAGACACTTTTCATGGATATGCTGGTTGAGCAAACACATCATGTAACCAC GTATAATACAAAGAGTGAAAAACATATGAGGTACACTGATACCAGAGTTGATGAGCAAGAAAGGAGAATATCCATCAAGGCAGTCCCTATGTCGCTAGTT CTTGAAGATATCAATTCAAAATCTTACTTGTGTAACATCATGGACACTCCTGGTCATGCAAATTTTTCAGATGAAATGACAGCTGCCCTCAGGATTGCTG ATGGTGCTGTGTTGGTTGTGGATGCTGCTGAAGGAGTGATGGTAAATACTGAGAGAGCAATACGCCATGCAATCCAGGAGCGTCTGCCAATTGTAGTTGT CATTAATAAGGTGGATAGACTGATAACAGAACTTAAGTTGCCTCCTAAGGATGCTTACCACAAGATAAGGCACACCATAGAGGTCATCAACAACCATATC TCTGCCGTCTCTTCAACTGCAGGGAATGCCACAGTTATAGATCCTGTTGCTGGAAATGTTTGCTTTGCAAGTGCTACTGCTGGATGGTCATTCACTCTCC AATCATTTGCTAGGCTGTATCTTAAACTCCATGGTATTCCTTTTGACCCTGATAGGTTCGCGGCACGCATGTGGGGGGATATGTATTATCACCCAGATTC AAGGACTTTCAAGAAGAAACCCCCTGCAGCTGGAGGGGAAAGATCTTTTGTTCAATTTGTTCTGGAACCTCTCTACAAAATATATAGCCAAGTGGTTGGA GAGCACAAGAAGAGTGTGGAAACTACTCTGGCTGAGCTTGGTGTGACTCTTCCTAATGCTGCTTATAGATTGAATGTAAGGCCCTTGCTGAGGTTGGCTT GCAGCAGAGTTTTTGGTACAGCTTCAGGTTTCACTAATATGTTGGTTCGACATATACCCTCTGCTAAGGATTCAGCTGTGAGGAAGGTTGATCATATATA CACTGGTCCTAAAGATTCTTTGCTTTATAAAGCAATGATAGAATGTGATCCGTCTGGTCCCTTGATGATCAATGTGACCAAATTGTATCCCAAGCCTGAT TGCAGTTCCTTTGATGCTTTTGGTAGAGTCTACAGTGGTAAAGTTATGACAGGACAGTCTGTGAAAGTACTAGGAGAAGGTTATTCACCAGAGGATGAGG AAGACATGACAGTGAAAGAAGTTACAAAGCTGTGTGTTTATCAAGCTCGGTATAGACTGCCTACAAGCATGGCACCACCTGGCTCTTGGGTTCTTATTGA AGGTGTAGATGCATCAATTATGAAAACAGCGACACTATGCAATGTGAATTATGATGATGACGTGTATATATTCCGGCCATTACAGTTCAATACCCTTCCA GTGGTAAAAACTGCTACTGAACCTTTGAATCCGAGTGAATTGCCAAAAATGGTGGAGGGACTTAGGAAGATCAGCAAAAGCTATCCTCTTGCTATAACTA AAGTTGAAGATTCTGGAGAGCACACAATTCTTGGTACTGGAGAATTATATTTGGATTCAATTATGAAAGACCTGCGGGAACTCTATTCTGAGGTGGAAGT CAAGGTAGCAGATCCTGTGGTGTCATTCTGTGAAACTGTGGTGGAATCATCTTCAATGAAATGTTTTGCTGAAACGCCAAACAAAAAGAATAAAATAACA ATGATAGCTGAGCCCTTGGAGAAAGGGCTTGCAGAAGACATTGAAAATGGCGTCGTAAGCACTGATTGGAGCAGGAAAGCTACCGGTGACTTCTTTAAAA CCAAATATGACTGGGATTTGCTTGCCGCTCGGTCAATATGGGCATTTGGTCCCGATAAACAGGGACCTAACATTTTATTGGATGACACACTTCCCACTGA AGTTGACAAGGGCTTGCTTAGTGCTGTCAAGGATTCTATTGTTCAGGGGTTTCAGTGGGGCGCACGAGAAGGACCTCTTTGTGACGAGCCAATCAGAAAT GTCAAATTTAAAATAGTTGATGCAAGAATTGCACCTGACCCGCTGCACCGAGCTTCAGGTCAGATTATTCCCACGGCTAGGAGAGTAGCGTATTCATCCT TCCTTATGGCAACACCACGGCTGATGGAACCCGTGTATTATGTCGAGATACAAACGCCAGTTGACTGCCTATCTGCAATTTATACTGTTCTGTCACGTAG GCGTGGACACGTGACAGCAGATGTTCCTCAGCCTGGAACTCCAGCTTATATAGTTAAGGCATTCTTACCAGTGATAGAGTCGTTTGGTTTCGAGACGGAC TTGAGGTACCACACGCAGGGGCAAGCATTCTGTCTCTCGGTGTTTGATCATTGGGCTATAGTACCTGGGGATCCTCTCGACAAAAGCATCGGTTTACGGC CACTGGAGCCAGCACCGATCCAGCATCTCGCCCGTGAGTTTATGGTGAAGACCAGGCGGCGCAAGGGAATGAGCGAAGATGTGAGCATCAACAAGTTCTT TGACGAGGCTATGATGGTTGAGCTGGCTCAGCAGGCTGCTGACATTCATCAAATGATGTGA
AA sequence Show only first row Show all	>Lus10031129 pacid=23150941 polypeptide=Lus10031129 locus=Lus10031129.g ID=Lus10031129.BGIv1.0 annot-version=v1.0 MDDNLYDEFGNYIGPEIESDHESDEEEDEDLQERPQAASDDDDEEAGNAASNGWLTASGDVDMDNQIVLAEDKKYYPTAEEVYGDDVETLVMDEDELPLE QPIIKPVRDIKMEVGVKDSSTFVSSQFLVGLMSNPSLIRNVALVGHIHHGKTLFMDMLVEQTHHVTTYNTKSEKHMRYTDTRVDEQERRISIKAVPMSLV LEDINSKSYLCNIMDTPGHANFSDEMTAALRIADGAVLVVDAAEGVMVNTERAIRHAIQERLPIVVVINKVDRLITELKLPPKDAYHKIRHTIEVINNHI SAVSSTAGNATVIDPVAGNVCFASATAGWSFTLQSFARLYLKLHGIPFDPDRFAARMWGDMYYHPDSRTFKKKPPAAGGERSFVQFVLEPLYKIYSQVVG EHKKSVETTLAELGVTLPNAAYRLNVRPLLRLACSRVFGTASGFTNMLVRHIPSAKDSAVRKVDHIYTGPKDSLLYKAMIECDPSGPLMINVTKLYPKPD CSSFDAFGRVYSGKVMTGQSVKVLGEGYSPEDEEDMTVKEVTKLCVYQARYRLPTSMAPPGSWVLIEGVDASIMKTATLCNVNYDDDVYIFRPLQFNTLP VVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEDSGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKIT MIAEPLEKGLAEDIENGVVSTDWSRKATGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKGLLSAVKDSIVQGFQWGAREGPLCDEPIRN VKFKIVDARIAPDPLHRASGQIIPTARRVAYSSFLMATPRLMEPVYYVEIQTPVDCLSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETD LRYHTQGQAFCLSVFDHWAIVPGDPLDKSIGLRPLEPAPIQHLAREFMVKTRRRKGMSEDVSINKFFDEAMMVELAQQAADIHQMM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10031129 [exp]	0	1
AT2G04865			Aminotransferase-like, plant m...		Lus10001737 [exp]	3.2	0.9360
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Lus10043332 [exp]	3.5	0.9430
AT3G23780		NRPE2, DMS2, DR...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10027166 [exp]	5.3	0.9337
AT3G55220		AtSAP130b, SAP1...	Arabidopsis thaliana spliceoso...		Lus10040321 [exp]	5.7	0.9368
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Lus10004038 [exp]	6.6	0.9467
AT1G02730		SOS6, ATCSLD5	SALT OVERLY SENSITIVE 6, CELLU...		Lus10025046 [exp]	6.8	0.9455
AT5G18750			DNAJ heat shock N-terminal dom...		Lus10012795 [exp]	6.8	0.9172
AT5G19320		RANGAP2	RAN GTPase activating protein ...		Lus10034066 [exp]	6.9	0.9316
AT3G55220		AtSAP130b, SAP1...	Arabidopsis thaliana spliceoso...		Lus10023443 [exp]	7.5	0.9371
AT3G22790			Kinase interacting (KIP1-like)...		Lus10006606 [exp]	8.1	0.9122

Compare expression of checked genes

Lus10031129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.