Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51550 508 / 0 EXL3 EXORDIUM like 3 (.1) AT2G17230 361 / 2e-124 EXL5 EXORDIUM like 5 (.1) AT2G35150 310 / 1e-104 EXL7, EXL1 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) AT1G35140 150 / 1e-42 EXL1, EXL7, PHI-1 PHOSPHATE-INDUCED 1, EXORDIUM like 1, Phosphate-responsive 1 family protein (.1) AT4G08950 143 / 5e-40 EXO EXORDIUM, Phosphate-responsive 1 family protein (.1) AT5G64260 142 / 1e-39 EXL2, MSJ1.10 EXORDIUM like 2 (.1) AT5G09440 120 / 7e-32 EXL4 EXORDIUM like 4 (.1) AT3G02970 72 / 6e-14 EXL6 EXORDIUM like 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031709 [exp] 412 / 6e-146 AT5G51550 377 / 2e-132 EXORDIUM like 3 (.1) Lus10026548 [exp] 352 / 9e-121 AT2G17230 499 / 2e-178 EXORDIUM like 5 (.1) Lus10013834 [exp] 351 / 1e-120 AT2G17230 496 / 4e-177 EXORDIUM like 5 (.1) Lus10018314 [exp] 320 / 4e-108 AT2G35150 395 / 5e-138 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) Lus10017138 [exp] 209 / 5e-67 AT2G35150 240 / 9e-80 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) Lus10017050 [exp] 141 / 3e-39 AT4G08950 404 / 2e-142 EXORDIUM, Phosphate-responsive 1 family protein (.1) Lus10021370 [exp] 141 / 3e-39 AT4G08950 403 / 1e-141 EXORDIUM, Phosphate-responsive 1 family protein (.1) Lus10010352 [exp] 141 / 4e-39 AT5G64260 378 / 2e-132 EXORDIUM like 2 (.1) Lus10013789 [exp] 107 / 1e-26 AT5G64260 203 / 1e-63 EXORDIUM like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G128100 [exp] 513 / 0 AT5G51550 521 / 0.0 EXORDIUM like 3 (.1) Potri.015G129700 [exp] 510 / 0 AT5G51550 521 / 0.0 EXORDIUM like 3 (.1) Potri.009G167800 [exp] 357 / 6e-123 AT2G17230 499 / 1e-178 EXORDIUM like 5 (.1) Potri.004G206600 [exp] 351 / 2e-120 AT2G17230 481 / 4e-171 EXORDIUM like 5 (.1) Potri.015G122100 [exp] 318 / 6e-108 AT2G35150 377 / 3e-131 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) Potri.002G098600 [exp] 156 / 5e-45 AT4G08950 404 / 4e-142 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.005G163000 [exp] 155 / 7e-45 AT5G64260 379 / 8e-133 EXORDIUM like 2 (.1) Potri.005G163500 [exp] 147 / 1e-41 AT4G08950 430 / 2e-152 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.014G126000 [exp] 147 / 2e-41 AT5G64260 240 / 9e-78 EXORDIUM like 2 (.1) Potri.001G311700 [exp] 146 / 2e-41 AT5G64260 444 / 2e-158 EXORDIUM like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04674 [flax] [poplar] Phi_1 Phosphate-induced protein 1 conserved region
Representative CDS sequence Show only first row Show all	>Lus10031130 pacid=23150986 polypeptide=Lus10031130 locus=Lus10031130.g ID=Lus10031130.BGIv1.0 annot-version=v1.0 ATGTCAATCCTCCTCCTCCTCCTCTTAACCCTCTCCGCCGCCGCCCCCCTCGCCTCCTCCTACCGTCCATACCCACCAAAACCAAACACCACAACCACCG CCGTAACCTCCGATGACCTCATCTACGGCGGCTCAAAGAAATTCGAAGGCTCCTCTGAATTCGTCCACCTCCGCTACCACATGGGCCCGGTCTTAACCAA CAACATAACCGTCCACACCATCTGGTACGGAAACTGGCTAAAACCCCAGAAAAAAATCATCCGTGAATTCATCTCCTCCATCTCCGCCGCCGCCTCCCCT CACCCTTCCGTCGCCGGCTGGTGGAAAACCGTCCAGATGTACACTGACCAAACCGGCTCCAACATCTCCCGCTCCGTACAGCTCGGCCAAGAGAAAAACG ACCGATTCTACTCCCACGGGAAATCCCTCACAAGATTATCAATCCAGTCGGTCATCAAATCCGCCGTTACTTCCAGATCTAATCCGCTCCCGATCAACCC GAAGAGCGGGCTTTATTTATTGTTGACCTCCGATGACGTGTACGTCCAGGATTTCTGCGGCCAGGTCTGTGGGTTCCACTACTTCACTTTCCCTTCCATC GTCGGGTACACGCTGCCGTACGCATGGGTTGGGAACAGTGCTAAGCTCTGCCCCGGAGTGTGTGCTTATCCGTTCGCCGTGCCGGAGTACATGCCGCAGC TGAAGCCGATGAGGGCTCCGAACGGTGACGTGGGCGTCGACGGGATGATTAGTGTGATTGGGCACGAGATTGCTGAGCTGGCGACGAATCCGTTGGCGAA TGCTTGGTACGCCGGCGGGGACCCGAGCTTTCCGGTGGAGATTGCGGATTTGTGTGAGGGTATTTACGGGACTGGCGGTGGAGGGTCGTATACTGGACAG ATGTTGGAGGGTCACGATGGCGCCACGTATAATATGAATGGGATCAGACGGCGGTACTTGGTTCAGTGGGTTTGGAACCATTTGGTTAATTACTGTTCTG GGCCTAATGCTTTGGATCAGTAG
AA sequence Show only first row Show all	>Lus10031130 pacid=23150986 polypeptide=Lus10031130 locus=Lus10031130.g ID=Lus10031130.BGIv1.0 annot-version=v1.0 MSILLLLLLTLSAAAPLASSYRPYPPKPNTTTTAVTSDDLIYGGSKKFEGSSEFVHLRYHMGPVLTNNITVHTIWYGNWLKPQKKIIREFISSISAAASP HPSVAGWWKTVQMYTDQTGSNISRSVQLGQEKNDRFYSHGKSLTRLSIQSVIKSAVTSRSNPLPINPKSGLYLLLTSDDVYVQDFCGQVCGFHYFTFPSI VGYTLPYAWVGNSAKLCPGVCAYPFAVPEYMPQLKPMRAPNGDVGVDGMISVIGHEIAELATNPLANAWYAGGDPSFPVEIADLCEGIYGTGGGGSYTGQ MLEGHDGATYNMNGIRRRYLVQWVWNHLVNYCSGPNALDQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51550		EXL3	EXORDIUM like 3 (.1)		Lus10031130 [exp]	0	1
AT5G08060			unknown protein		Lus10034681 [exp]	3.0	0.8350
AT4G37100			Pyridoxal phosphate (PLP)-depe...		Lus10019650 [exp]	3.2	0.7662
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10014001 [exp]	7.1	0.7837
AT1G28390			Protein kinase superfamily pro...		Lus10039770 [exp]	7.5	0.7702
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Lus10024901 [exp]	8.4	0.8168
AT3G07260	FHA		SMAD/FHA domain-containing pro...		Lus10038196 [exp]	9.5	0.7771
AT2G16770	bZIP	bZIP23	Basic-leucine zipper (bZIP) tr...		Lus10027847 [exp]	12.0	0.7794
AT4G35040	bZIP	bZIP19	Basic-leucine zipper (bZIP) tr...		Lus10005073 [exp]	22.8	0.7780
AT5G44170			S-adenosyl-L-methionine-depend...		Lus10039876 [exp]	23.5	0.7597
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Lus10032313 [exp]	24.2	0.7669

Compare expression of checked genes

Lus10031130 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.