Plant FIBer expression Database

Lus10031131 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G51545 117 / 3e-33 LPA2 low psii accumulation2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031710
[exp]
248 / 1e-84 AT5G51545 163 / 3e-51 low psii accumulation2 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G129600
[exp]
132 / 3e-39 AT5G51545 118 / 1e-33 low psii accumulation2 (.1)
Potri.012G128000
[exp]
69 / 1e-14 AT5G51545 59 / 7e-11 low psii accumulation2 (.1)
PFAM info
Representative CDS sequence
>Lus10031131 pacid=23151067 polypeptide=Lus10031131 locus=Lus10031131.g ID=Lus10031131.BGIv1.0 annot-version=v1.0
ATGGCGCTACAATTCCGGTCACCATTTCCTCTCACTGACCAACCTTATCGTCATCTTCCCAATCACCGCCTCCAAATCTCTTCCCGGAAGCTCAAATTCT
CTGTCAGGTCGCAAACTCCGTCGACGGAATCGGCCAACGAACCTGCTCCTCCGCCCAAGAAAGGCTTCGGCTCGCCGTCGCCTCCCGCTAAGCCCGTCGG
AACCGGTAAGAAGAAGCAGAAGGGGAGAAGCGAGAGGGAGGATATAATTAGGCGGTCGCCGGTGGGGAAGCAGGCGTTCATCGGCGAGAAAGTTGAAGGT
AAGGTTGACGAGGAGCAAGGGGCGAACGAGCGTGCTTTTGTTCTGACCTGGTTAGGGCTTGGCGGAGTCATTCTTGTTCAAGGAATCGTCCTTTCAGCTT
CAGGGTTCCTACCAGAAGAATGGGATAGGTTCTTTGTGAAGTATCTATTTCCAACTTTCACTCCAACGGTTGGTTTGTTTCTTGCTGGGACTGTGGCGTA
TGGAGTGTTGAAGTATCTGCAGAACGAGAAGCTTAAGGATACGAAGTGA
AA sequence
>Lus10031131 pacid=23151067 polypeptide=Lus10031131 locus=Lus10031131.g ID=Lus10031131.BGIv1.0 annot-version=v1.0
MALQFRSPFPLTDQPYRHLPNHRLQISSRKLKFSVRSQTPSTESANEPAPPPKKGFGSPSPPAKPVGTGKKKQKGRSEREDIIRRSPVGKQAFIGEKVEG
KVDEEQGANERAFVLTWLGLGGVILVQGIVLSASGFLPEEWDRFFVKYLFPTFTPTVGLFLAGTVAYGVLKYLQNEKLKDTK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G51545 LPA2 low psii accumulation2 (.1) Lus10031131
[exp]
0 1
AT5G51545 LPA2 low psii accumulation2 (.1) Lus10031710
[exp]
3.7 0.9130
AT4G17560 Ribosomal protein L19 family p... Lus10014467
[exp]
4.0 0.9157
AT1G76760 ATY1, TRX-Y1 thioredoxin Y1 (.1) Lus10028569
[exp]
6.5 0.9055
AT3G25410 Sodium Bile acid symporter fam... Lus10025862
[exp]
6.7 0.9070
AT4G01690 PPOX, HEMG1, PP... Flavin containing amine oxidor... Lus10010082
[exp]
7.4 0.8947
AT3G25410 Sodium Bile acid symporter fam... Lus10038237
[exp]
7.5 0.9096
AT1G74970 TWN3, RPS9 ribosomal protein S9 (.1) Lus10016295
[exp]
11.2 0.8972
AT4G17560 Ribosomal protein L19 family p... Lus10023720
[exp]
11.6 0.9099
AT5G36170 ATPRFB, HCF109 high chlorophyll fluorescent 1... Lus10036446
[exp]
13.8 0.8838
AT1G56180 unknown protein Lus10006532
[exp]
14.1 0.8951

Lus10031131 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.