Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62350 211 / 1e-69 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G47380 196 / 1e-63 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G25260 187 / 2e-60 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G12390 164 / 2e-51 PME1 pectin methylesterase inhibitor 1 (.1) AT1G62770 162 / 1e-50 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G62360 158 / 6e-49 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT2G01610 139 / 2e-41 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G62760 140 / 8e-41 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G14890 135 / 6e-40 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G25250 127 / 5e-37 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031713 [exp] 343 / 7e-122 AT5G62350 202 / 4e-66 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10038914 [exp] 226 / 5e-76 AT5G62350 192 / 1e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10027198 [exp] 225 / 2e-75 AT5G62350 191 / 3e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10032230 [exp] 153 / 9e-47 AT1G62770 166 / 9e-52 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10038915 [exp] 149 / 3e-45 AT5G62360 174 / 5e-55 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031138 [exp] 142 / 2e-42 AT5G62360 172 / 3e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10027199 [exp] 142 / 2e-42 AT5G62360 169 / 3e-53 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031711 [exp] 139 / 2e-41 AT5G62360 145 / 4e-44 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10024593 [exp] 131 / 2e-38 AT1G62770 162 / 2e-50 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G127500 [exp] 244 / 5e-83 AT5G62350 220 / 2e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128700 [exp] 243 / 2e-82 AT5G62350 221 / 7e-74 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G113700 [exp] 183 / 1e-58 AT4G12390 178 / 1e-56 pectin methylesterase inhibitor 1 (.1) Potri.015G128200 [exp] 176 / 4e-56 AT5G62360 172 / 1e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128100 [exp] 175 / 1e-55 AT5G62360 221 / 1e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128300 [exp] 173 / 6e-55 AT5G62360 192 / 1e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128400 [exp] 152 / 2e-46 AT5G62360 134 / 2e-39 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G145800 [exp] 149 / 2e-45 AT4G00080 164 / 4e-51 unfertilized embryo sac 11, Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.012G127400 [exp] 147 / 1e-44 AT4G25250 150 / 7e-46 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.001G119300 [exp] 147 / 2e-44 AT1G62760 167 / 3e-51 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10031133 pacid=23151155 polypeptide=Lus10031133 locus=Lus10031133.g ID=Lus10031133.BGIv1.0 annot-version=v1.0 ATGGCAAACCCTAAATTTCCCCTTCTCCTAATCTCCATCCTCACCATCACCATCACCCTAGCCTCAGCATCCAACCCGGCGACATCGAGCACCGTCGCAG CGACAAACTTCATAAAGTCCTCCTGCAGTACCACGACCTACCCAGCACTCTGCGTGCAGTCTCTCCTGTCTTACGCCCCGACCATCCAGCGCAGCCCGCG TCAGCTGGCGCAGACTGCGTTGGCAGTAAGTCTGGCCAGGGCGCAGTCCACGAGCTCCTTCGTCAGGAAGCTGGCCAGGTTCAAGGGTCTGAGGCCCAGG GAGGTGGCCGCCATCAAAGACTGCAAGGAAGAGATCGAGGACACAGTTGACCGGCTCAGCAAGTCGATCAAGGAGCTGAAGATGGTCGGGACGGGTGGCG GGCCAGGGTTCGAGTGGCACGTGAGCAATGTGGTGACGTGGGTCAGCGCGGCGTTGACGAACGAGAACACGTGTGTGGACGGGTTTGGTGGGAAGGCGTT GAATGGGAGGATGAAGGATGGGATTAGAGGGAGGTTTAGGAACACTGTTCAGGTTACTAGTAATGCTTTGGCTTTGATTAATAAGTACGCTAATAAGCAC TGA
AA sequence Show only first row Show all	>Lus10031133 pacid=23151155 polypeptide=Lus10031133 locus=Lus10031133.g ID=Lus10031133.BGIv1.0 annot-version=v1.0 MANPKFPLLLISILTITITLASASNPATSSTVAATNFIKSSCSTTTYPALCVQSLLSYAPTIQRSPRQLAQTALAVSLARAQSTSSFVRKLARFKGLRPR EVAAIKDCKEEIEDTVDRLSKSIKELKMVGTGGGPGFEWHVSNVVTWVSAALTNENTCVDGFGGKALNGRMKDGIRGRFRNTVQVTSNALALINKYANKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62350			Plant invertase/pectin methyle...		Lus10031133 [exp]	0	1
AT1G17860			Kunitz family trypsin and prot...		Lus10007890 [exp]	8.7	0.9369
AT3G15980			Coatomer, beta' subunit (.1.2....		Lus10002324 [exp]	13.6	0.9208
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10005399 [exp]	20.4	0.9267
AT1G17860			Kunitz family trypsin and prot...		Lus10022302 [exp]	25.8	0.9220
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10005358 [exp]	28.8	0.9174
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10029826 [exp]	30.0	0.8782
AT1G13090		CYP71B28	"cytochrome P450, family 71, s...		Lus10002670 [exp]	33.5	0.9055
AT1G17860			Kunitz family trypsin and prot...		Lus10042301 [exp]	40.2	0.9159
AT1G17860			Kunitz family trypsin and prot...		Lus10039209 [exp]	40.5	0.9055
AT1G17860			Kunitz family trypsin and prot...		Lus10013770 [exp]	41.8	0.9149

Compare expression of checked genes

Lus10031133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.