Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25270 185 / 8e-57 OTP70 organelle transcript processing 70, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 129 / 2e-35 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G56310 127 / 5e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 127 / 1e-34 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G37570 125 / 5e-34 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G46790 124 / 1e-33 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G40410 124 / 1e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G01030 124 / 1e-33 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G39350 124 / 2e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G71490 123 / 3e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031714 [exp] 258 / 1e-82 AT4G25270 672 / 0.0 organelle transcript processing 70, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019735 [exp] 136 / 8e-38 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016387 [exp] 134 / 1e-37 AT4G33990 717 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 131 / 8e-36 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10031989 [exp] 129 / 3e-35 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030225 [exp] 125 / 5e-35 AT5G08510 472 / 2e-165 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005987 [exp] 125 / 2e-34 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020588 [exp] 119 / 2e-33 AT2G27610 422 / 2e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002553 [exp] 117 / 2e-32 AT2G22410 365 / 3e-122 SLOW GROWTH 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G128800 [exp] 196 / 9e-61 AT4G25270 664 / 0.0 organelle transcript processing 70, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G085500 [exp] 130 / 7e-36 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G124400 [exp] 129 / 2e-35 AT5G39350 785 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G097000 [exp] 129 / 3e-35 AT4G01030 906 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.001G466066 [exp] 126 / 3e-34 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G034900 [exp] 125 / 3e-34 AT4G21065 370 / 2e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.003G223900 [exp] 124 / 9e-34 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G215500 [exp] 124 / 2e-33 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G243800 [exp] 122 / 5e-33 AT5G59600 639 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G060600 [exp] 121 / 7e-33 AT3G24000 331 / 3e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10031134 pacid=23151034 polypeptide=Lus10031134 locus=Lus10031134.g ID=Lus10031134.BGIv1.0 annot-version=v1.0 ATGGTGGCCGAGAACGTGATCCCGGACAACATCACATTCGTCGCGATTCTATCTGCGTGCGCTCATCTGCGATTGGTCAAAGAAGGGGAGAGGCTGTTTT TCGATCTGTTGAGACGGAAGTATAAAATGAGACCGATTTTGGAGCATTACGCGTGCATGGTGAATCTGTACGGGAGGGCAGGACCGGTGGAGAAAGCGTA CGATTTCGTGATCGAGTCGATGGAGTTGGAAGCCGGGCCGACTGTGTGGGGAGCTCTGCTGCATGCTTGTTATGTGCATGGGAATGTGGAGATTGGAGAG GTTGCTGCTCAGTGTCTGTTTGAGCTTGAACCTGATAATGAACATAATTTCGAACTTCTGGTGAAGATCTATAGCGATGTCGGGAGGGTGACGGATGCTG AGAGGATTGTAAATGATGAACAATGTATATGGTGGCAAAGACTGAAAGGTAACCAGTTCTCGTGA
AA sequence Show only first row Show all	>Lus10031134 pacid=23151034 polypeptide=Lus10031134 locus=Lus10031134.g ID=Lus10031134.BGIv1.0 annot-version=v1.0 MVAENVIPDNITFVAILSACAHLRLVKEGERLFFDLLRRKYKMRPILEHYACMVNLYGRAGPVEKAYDFVIESMELEAGPTVWGALLHACYVHGNVEIGE VAAQCLFELEPDNEHNFELLVKIYSDVGRVTDAERIVNDEQCIWWQRLKGNQFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25270		OTP70	organelle transcript processin...		Lus10031134 [exp]	0	1
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Lus10022673 [exp]	2.6	0.8652
AT1G07740			Tetratricopeptide repeat (TPR)...		Lus10005876 [exp]	3.7	0.7974
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Lus10012499 [exp]	4.0	0.8457
AT5G47830			unknown protein		Lus10018732 [exp]	5.5	0.8111
AT2G21290			unknown protein		Lus10018053 [exp]	6.3	0.8054
AT5G16420			Pentatricopeptide repeat (PPR-...		Lus10005989 [exp]	7.4	0.7508
AT2G41080			Tetratricopeptide repeat (TPR)...		Lus10003325 [exp]	10.2	0.8230
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10041159 [exp]	10.4	0.8290
AT3G60480			unknown protein		Lus10034728 [exp]	10.8	0.7740
AT3G18840			Tetratricopeptide repeat (TPR)...		Lus10001445 [exp]	11.3	0.7089

Compare expression of checked genes

Lus10031134 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.