Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25280 263 / 7e-89 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G26667 221 / 4e-73 PYR6 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT3G60180 208 / 4e-68 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G60961 143 / 2e-43 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G47840 97 / 3e-24 AMK2 adenosine monophosphate kinase (.1) AT5G35170 89 / 5e-20 adenylate kinase family protein (.1.2) AT5G63400 79 / 2e-17 ADK1 adenylate kinase 1 (.1.2) AT2G37250 79 / 2e-17 ADK, ATPADK1 adenosine kinase (.1) AT2G39270 77 / 2e-16 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G50370 74 / 7e-16 Adenylate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031714 [exp] 346 / 4e-115 AT4G25270 672 / 0.0 organelle transcript processing 70, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031611 [exp] 219 / 4e-72 AT5G26667 343 / 1e-121 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10033733 [exp] 218 / 9e-71 AT5G26667 336 / 2e-117 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10019509 [exp] 152 / 9e-47 AT5G26667 217 / 5e-73 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10009228 [exp] 96 / 1e-23 AT5G47840 296 / 3e-101 adenosine monophosphate kinase (.1) Lus10037995 [exp] 93 / 3e-23 AT5G47840 315 / 9e-110 adenosine monophosphate kinase (.1) Lus10003504 [exp] 94 / 5e-23 AT5G47840 300 / 1e-102 adenosine monophosphate kinase (.1) Lus10009478 [exp] 89 / 8e-22 AT5G47840 293 / 1e-101 adenosine monophosphate kinase (.1) Lus10036326 [exp] 85 / 1e-18 AT5G35170 658 / 0.0 adenylate kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G129000 [exp] 278 / 3e-95 AT4G25280 301 / 6e-104 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G043300 [exp] 224 / 1e-74 AT5G26667 358 / 2e-127 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.002G134600 [exp] 221 / 5e-73 AT5G26667 345 / 1e-122 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.014G104700 [exp] 208 / 4e-68 AT5G26667 275 / 8e-95 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.019G078200 [exp] 94 / 1e-22 AT5G47840 332 / 8e-115 adenosine monophosphate kinase (.1) Potri.013G103400 [exp] 91 / 9e-22 AT5G47840 347 / 1e-120 adenosine monophosphate kinase (.1) Potri.018G113400 [exp] 87 / 2e-19 AT5G35170 838 / 0.0 adenylate kinase family protein (.1.2) Potri.010G215300 [exp] 77 / 2e-16 AT2G37250 382 / 2e-134 adenosine kinase (.1) Potri.008G046100 [exp] 72 / 7e-15 AT2G37250 377 / 1e-132 adenosine kinase (.1) Potri.015G092800 [exp] 69 / 5e-14 AT5G63400 425 / 6e-153 adenylate kinase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00406 [flax] [poplar] ADK Adenylate kinase
Representative CDS sequence Show only first row Show all	>Lus10031135 pacid=23150943 polypeptide=Lus10031135 locus=Lus10031135.g ID=Lus10031135.BGIv1.0 annot-version=v1.0 ATGAATAGCTTTGTTTTTCCGCTTGATTCTGAATCTTCCTGTTTCTGCGAGCAGCTTAGCTACGCAACTTCTTGCCTCAGAGAGAAAAATCCTTTCATCA CTTTCGTATTAGGTGGCCCTGGGAGTGGAAAAGGAACTCAATGCGAAAGGATTGCAGCGACATTTGGTTTAACACATCTGAGCGCTGGAGATTTGCTGAG GAAGGAAATACTAACCAACAGTAAAGAGAAGGCTACAATCCTTAACATAATCAAGGATGGCAAGATCGTCCCATCAGAGGTGACTGTCAAGCTGATCCTG AAGGAGATGGAGTCAAGTCACAGCAACAAGTTCCTTATCGATGGGTTCCCACGAACCGAAGAGAATCGTGTGGCCTTCGAACGAATCATTGGATTAGAAC CGAATGCTGTTCTGTTCTTCGATTGCCCAGAAGAAGAAATGGTGAAAAGGGTGCTGAACCGTAACCAGGGACGAGTCGATGACAACATAGACACATTCAA GAAACGTTTGAAAGTGTTTGAAGCAATGAGCCTCCCTGTTGTTCACCACTACTCCAAGAAAGGAAAACTGCACAAGCTATTCAGCTCTGATGCTTTAACT TTCCTCCGGGATTTGGCTCAGATAAAACGCGGTGGGAGACGTGGACGAAATCTTCGAACAAGCTCACGCTGTTTTCGCTTCACCAGAGATGATGATTAA
AA sequence Show only first row Show all	>Lus10031135 pacid=23150943 polypeptide=Lus10031135 locus=Lus10031135.g ID=Lus10031135.BGIv1.0 annot-version=v1.0 MNSFVFPLDSESSCFCEQLSYATSCLREKNPFITFVLGGPGSGKGTQCERIAATFGLTHLSAGDLLRKEILTNSKEKATILNIIKDGKIVPSEVTVKLIL KEMESSHSNKFLIDGFPRTEENRVAFERIIGLEPNAVLFFDCPEEEMVKRVLNRNQGRVDDNIDTFKKRLKVFEAMSLPVVHHYSKKGKLHKLFSSDALT FLRDLAQIKRGGRRGRNLRTSSRCFRFTRDDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25280			P-loop containing nucleoside t...		Lus10031135 [exp]	0	1
AT4G36720		HVA22K	HVA22-like protein K (.1)		Lus10010093 [exp]	13.5	0.8245
AT3G07750			3'-5'-exoribonuclease family p...		Lus10006382 [exp]	16.2	0.7779
AT1G50575			Putative lysine decarboxylase ...		Lus10003762 [exp]	20.9	0.8217
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Lus10030600 [exp]	22.4	0.8166
AT2G17900		ASHR1, SDG37	ASH1-related 1, SET domain gro...		Lus10029712 [exp]	22.4	0.8055
AT4G37020			unknown protein		Lus10000435 [exp]	22.8	0.7906
AT5G09250		KIWI	ssDNA-binding transcriptional ...		Lus10013733 [exp]	30.2	0.7822
AT2G37680		PAT3, FRY1, FHY...	unknown protein		Lus10003966 [exp]	31.7	0.7632
AT4G35980			unknown protein		Lus10028436 [exp]	37.5	0.7985
AT3G05675			BTB/POZ domain-containing prot...		Lus10021269 [exp]	37.8	0.7505

Compare expression of checked genes

Lus10031135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.