Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51540 918 / 0 Zincin-like metalloproteases family protein (.1) AT1G67690 124 / 2e-29 Zincin-like metalloproteases family protein (.1) AT5G10540 116 / 9e-27 Zincin-like metalloproteases family protein (.1) AT5G65620 115 / 2e-26 Zincin-like metalloproteases family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031715 [exp] 1332 / 0 AT5G51540 1017 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10037058 [exp] 125 / 1e-29 AT1G67690 858 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10019236 [exp] 116 / 1e-26 AT5G65620 1073 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10036925 [exp] 115 / 2e-26 AT1G67690 826 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10004276 [exp] 85 / 1e-16 AT5G10540 1183 / 0.0 Zincin-like metalloproteases family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G129300 [exp] 991 / 0 AT5G51540 1015 / 0.0 Zincin-like metalloproteases family protein (.1) Potri.010G054466 [exp] 138 / 6e-34 AT1G67690 850 / 0.0 Zincin-like metalloproteases family protein (.1) Potri.007G004600 [exp] 121 / 2e-28 AT5G65620 1196 / 0.0 Zincin-like metalloproteases family protein (.1) Potri.014G010100 [exp] 118 / 3e-27 AT5G65620 1199 / 0.0 Zincin-like metalloproteases family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01432 [flax] [poplar] Peptidase_M3 Peptidase family M3
Representative CDS sequence Show only first row Show all	>Lus10031136 pacid=23151078 polypeptide=Lus10031136 locus=Lus10031136.g ID=Lus10031136.BGIv1.0 annot-version=v1.0 ATGCCGTCGGTGATTCGGAGAACAGCGGGGAGGCTGCTCCAGCACCAATTCAGCTTAAAATCAATCTGCTCGTCGTATCTTCTGCCGCGTGGTCGCCATT TCAGCAGTCGAGTGTCGCCGCGTAGCGAGGAAGCTACAGCCGGTCTCTATGGATTCCACCATTTGAAGACCGCGGCAGGATTCTCGCGGTTCGTCGATGA CGCCATTGAAAGGTCAACGGAGCTGGTTGAATATATTTCCACCATGCCTTCATCGGCTGAGATTATCAGAGCGATGGACGAGATTTCAGATTCTGTGTGT TCTGTTGTGGACTCTGCTGAACTTTGTCGAAATACTCATCCGGACAGGGAGTTTGTTGAGGAGGCTAGCAATGCAGCAATGAGGCTTAATGAATATCTAC ATTACCTTAATACGAATCATACCCTATACGCTGCGGTGAAAAGGGCTGAGCAAGATGGTCATTCACTTTCAGCAGAAGCTCACAGAGCTGCTCGCCACCT AAGGATTGACTTTGAAAAGGGTGGAATCCATCTCCCACCTGATAAGTTGGACAGGTTAAATCAGCTGAATATAGACATTTTCAAGCTCTCCCGAGAGTTT GGTGAAAACATTAGTTCTGATCCTGGCCATCTAGAAATTTTCCCTGCATCTCGCATCCCCAGACAGATACGTCATCTTCTTACTCCCATCCATCGTCTCA AGTCTGGTACTTCAAGTGGATCACTAAGTCCGTGGAATAGCGTGAAAGAAAAAGGATACCGGATATCGACTGAGCCACGCACTCTAGCTTCTGTTATGCA GTGGACTGCTGATGAGGAGGTTAGGAGAACAGCCTTTATCAAGGGAAACTCTGTCCCTCAGGCAAACCTTGGAGTTCTTGAAAAGCTTATTGCTGCTCGG CACGAGCTGTCTCAGATAATGGACTGTAGATCATATGCTGACTTTGTGGTCAAACAAAACTTGGCTTCTTCCCCTGAAGTTGTCACATCCTTCCTCCGTG ATATGGGTACCACCGTCCGACCAAAGGCCGACGAGGAGTTTGACAAAATTAAGAACTTCAAGCAAGAAAAATGCAGTGGAGATTCTACTGATTTGTACCC ATGGGACGAGGCATATTACACCGGAATGATGAAGTCTTCAATGCAGGATTTGGATTCGTCAATAGTATCTTCATATTTCCCATTGCCACATTGTATTGAA GGTCTAAAAATTCTGGTGAAATCGTTATTTGGTGCAACATTTCATGAAGTCTCTATGGCTGTAGGAGAATCGTGGCATCCAGATGTCCTTAAAATGATTC TCCACCATCCCGACGAGGGTGACTTGGGGACTCTCTACCTTGATCTGTACCAAAGGAAGGGCAAATATCCAGGTTGTGCCAATTTTTCAATCAAAGGAGG ACGGCGCATCTCTGAAACCGAATACCAGCTGCCTGTAGTGGCCCTTTTCTGCAAATTTTCGGGGTTACCTGATTCATCAAGTGAGAGAAAAACTTTGCCG AGACACCATCAAACCTCTTTGAGTGAGTACTACGCGTGGGACTACCGTGTCTTGAAGACATTTGCGAAGCACTACACCACTGGAGAAGTTATCCCCGAGA AACTAGTGGAATCGTTACTAGGAGCCAGAGATATGTTTGCTGCTACTGAACTTCAACGCCAGGTTTTCTATTCGCTGGTTGACCAAACTCTTTTTGGAGA ACAACCTACCCAGATCCGCAACACGAGCTCGATCGTAGCAGACCTCAAGAGAGAGTTTACCAGCTGGGAGCATGTTGATGGTACACATTGGGAAGCAAGA TTCAGCCATCTCTTAAACTACGGTGCAGGTTACTACAGCTACTTGTACGCAAGATGCATATCAGCAACCATATGGAAAAAGCTATGCAAAGAAGATCCAC TGTCACTGGTCACAGGCACCGCGCTCCGAACCAAGCTGTTGCAGCACGGCGGAGCTAAGGAGCCGGCTGAAATGCTGCAGGACCTCACCGGAGACGGGAT TCTTAAGCACTACAACGGAGGGATAGTTCCTGACACCACAAGTTTCCTGCAAGAATTTAAGTTGGTGGTCGAAAGATAG
AA sequence Show only first row Show all	>Lus10031136 pacid=23151078 polypeptide=Lus10031136 locus=Lus10031136.g ID=Lus10031136.BGIv1.0 annot-version=v1.0 MPSVIRRTAGRLLQHQFSLKSICSSYLLPRGRHFSSRVSPRSEEATAGLYGFHHLKTAAGFSRFVDDAIERSTELVEYISTMPSSAEIIRAMDEISDSVC SVVDSAELCRNTHPDREFVEEASNAAMRLNEYLHYLNTNHTLYAAVKRAEQDGHSLSAEAHRAARHLRIDFEKGGIHLPPDKLDRLNQLNIDIFKLSREF GENISSDPGHLEIFPASRIPRQIRHLLTPIHRLKSGTSSGSLSPWNSVKEKGYRISTEPRTLASVMQWTADEEVRRTAFIKGNSVPQANLGVLEKLIAAR HELSQIMDCRSYADFVVKQNLASSPEVVTSFLRDMGTTVRPKADEEFDKIKNFKQEKCSGDSTDLYPWDEAYYTGMMKSSMQDLDSSIVSSYFPLPHCIE GLKILVKSLFGATFHEVSMAVGESWHPDVLKMILHHPDEGDLGTLYLDLYQRKGKYPGCANFSIKGGRRISETEYQLPVVALFCKFSGLPDSSSERKTLP RHHQTSLSEYYAWDYRVLKTFAKHYTTGEVIPEKLVESLLGARDMFAATELQRQVFYSLVDQTLFGEQPTQIRNTSSIVADLKREFTSWEHVDGTHWEAR FSHLLNYGAGYYSYLYARCISATIWKKLCKEDPLSLVTGTALRTKLLQHGGAKEPAEMLQDLTGDGILKHYNGGIVPDTTSFLQEFKLVVER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51540			Zincin-like metalloproteases f...		Lus10031136 [exp]	0	1
AT5G14520			pescadillo-related (.1)		Lus10000357 [exp]	6.2	0.8863
AT3G21540			transducin family protein / WD...		Lus10012475 [exp]	10.2	0.8741
AT3G19740			P-loop containing nucleoside t...		Lus10040976 [exp]	10.5	0.8631
AT5G55610			unknown protein		Lus10016608 [exp]	13.6	0.8106
AT5G38880			unknown protein		Lus10035251 [exp]	15.4	0.7503
AT5G44230			Pentatricopeptide repeat (PPR)...		Lus10014279 [exp]	17.7	0.8013
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10025853 [exp]	21.2	0.8599
AT4G21660			proline-rich spliceosome-assoc...		Lus10011207 [exp]	21.4	0.8253
AT3G19740			P-loop containing nucleoside t...		Lus10010204 [exp]	23.7	0.8407
AT3G30300			O-fucosyltransferase family pr...		Lus10034356 [exp]	24.5	0.8335

Compare expression of checked genes

Lus10031136 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.