Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25290 764 / 0 DNA photolyases;DNA photolyases (.1) AT4G36530 144 / 7e-38 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G19850 126 / 2e-31 alpha/beta-Hydrolases superfamily protein (.1) AT5G38520 103 / 1e-23 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G13800 91 / 6e-19 CRN1, PPH Co-regulated with NYE1, pheophytinase (.1.2) AT5G24850 71 / 1e-12 CRY3 cryptochrome 3 (.1) AT4G33180 60 / 2e-09 alpha/beta-Hydrolases superfamily protein (.1) AT2G47590 60 / 3e-09 PHR2 photolyase/blue-light receptor 2 (.1) AT1G13820 53 / 5e-07 alpha/beta-Hydrolases superfamily protein (.1) AT5G39220 50 / 3e-06 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031716 [exp] 1140 / 0 AT4G25290 700 / 0.0 DNA photolyases;DNA photolyases (.1) Lus10028315 [exp] 157 / 3e-42 AT4G36530 538 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10041763 [exp] 143 / 5e-37 AT4G36530 484 / 6e-172 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10025172 [exp] 128 / 3e-30 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10005320 [exp] 106 / 3e-24 AT5G13800 551 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Lus10003969 [exp] 105 / 4e-24 AT5G38520 426 / 2e-149 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10019755 [exp] 102 / 2e-22 AT5G13800 589 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Lus10020878 [exp] 67 / 3e-11 AT5G24850 732 / 0.0 cryptochrome 3 (.1) Lus10037072 [exp] 61 / 4e-10 AT1G13820 367 / 2e-128 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G129500 [exp] 857 / 0 AT4G25290 809 / 0.0 DNA photolyases;DNA photolyases (.1) Potri.005G121000 [exp] 152 / 3e-40 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G219700 [exp] 121 / 2e-29 AT5G19850 504 / 6e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.019G063900 [exp] 114 / 4e-27 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G054800 [exp] 104 / 3e-23 AT5G13800 610 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Potri.006G277500 [exp] 72 / 5e-13 AT5G24850 781 / 0.0 cryptochrome 3 (.1) Potri.010G158800 [exp] 66 / 3e-11 AT1G13820 489 / 4e-175 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G204000 [exp] 64 / 3e-10 AT2G47590 530 / 0.0 photolyase/blue-light receptor 2 (.1) Potri.014G128500 [exp] 62 / 7e-10 AT2G47590 540 / 0.0 photolyase/blue-light receptor 2 (.1) Potri.004G120000 [exp] 57 / 3e-08 AT5G39220 433 / 9e-153 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00875 [flax] [poplar] DNA_photolyase DNA photolyase
Representative CDS sequence Show only first row Show all	>Lus10031137 pacid=23151044 polypeptide=Lus10031137 locus=Lus10031137.g ID=Lus10031137.BGIv1.0 annot-version=v1.0 ATGGCTGCAGCTCTCCTCTCCTCCTCACCCCGCTTCCTCTTCCTCTCGCCGGCCAACATTCCTCCGTCCTTCAGGCGTCGGAGCTCGTACCACTGCCGCC GCTGCTCATCCATTTCTGCTTCCACACCAGGAAGGCGTAATGTCGACTTGAAGACGGTGGCGATCGTCTGGTTCAAGCAGGATCTCCGCGTCGACGATCA CCCTGGCATCGTAGATGCCTCCGGTTTCGAAGCTGTCGTCCCTGTCTACGTGTTCGATCACCGGATTCTCTCTCGCTATTCTGATGAGATGCTTGAGCTG GTTCTCTTCGCGCTGGAGGATTTAAAGAGGTCTCTGATTCAGCTGGGATCCAATTTGATGATCAGGTTTGGTGATGCTGAGAGTATCATCAGGAGCTTGG CGCTAGAGGTGAGATCTTCTAACGTGATTGTTGAAGAAGAAGTTGAGTATCACTTGATTGAGATGGTGGAAATCATGGAGAAAACGTTGACAGAGATGCC ACTTTCAGCTGGAAACTCTAAGATCATGCGGTGGCGAACTCCATTTTATGATTTTAAGAACTTGACAGGATTGCCTGCTAACTATGAAGAGTTCAAGAAA CTGAAGTTGCCCATTACTTCACCGGTTCCACAGCCTCCAAATTTACCTGGTTCAGAGTTCGAACTGGACTGGGGTACATTGCCAACAATGGATCAGTTGA AGGGGTATATGGATCAGAATCCTTCCAAACTGAAAGAGACTTGGAGTTCAGTGAAGCAGATCTCAACCGAATCTATACTGCAGAAAAGAAATAAAGTGTC GAAGTCCGGGGACAGTTTGAATCGCAGTCTTATGAAGAGAAACAAACTTAAGAATACTGTTTTCATTACGGAAGAACAGAACTTTGTTGGAGGTGGGAGC AGCAGCGTACTTAATGGGTTGGCTGCTTACTTGAGATATTTGGAGGGAACTGCACGGGATGATTGGCAAGAGGTACATGCGAAGTTACGAAGTGCTGAGA CCAGGGACGGAGCTTCGTTTTCAGCAATTTTTGGACCCGCTCTTTCTCTCGGCATCATATCAAGAAGGAAGGTATATATGGAAGCAATAAGATATGATCG AGAAAGAAATGGTGGTTTTCAATCACCTTTTGGATATTCAACAGTCACAATTGCTGCAGCTGTTAATGCTGTGTGCTCAATGGAGTGGTATTGGCTTATG GCTCTAAAAGGACAACGTAATGAAGAAGGATTGAATTCTACTCGGATATGGAGATGGAATGGCTGCTTGGTTCAGTATGCTGTTGCCGGCCAGAAAGGGC CACCAGTTCTCCTTGTACATGGTTTTGGAGCTTTCTCAGAACACTACCGAGACAATGTCCATCAAATAGCTGAAGGAGGAAATCGTGTCTGGGCAATTAC GCTTCTCGGTTTCGGAAAATCTGAAAAGCCGAGTGTCGTATATACCGAACTTCTCTGGGCTGAATTGTTGAAGGATTTCATCATCGAAGTTGTGCACGAA CCGGTACACCTAGTGGGCAACTCGATTGGCGGCTATGTCGCGTCCATTGCTACGTGTTTCTGGCCTTCGTTGGTACGGTCTATCGTTCTTGTCAACAGTG CTGGGAATATCGTGCCTGGCTACCGTTACCTCCCTTTTTCCAAAGAAAGGAGGATTGCTGGAGCAGCATGGCTCGGAGCACGTGCCATTTTGCTGTACTT GCGGTCAAACATCAGAAGCATAGTGCGGAATTGCTACCCAACCAGACCCGTTCGAGCAGACGATTGGCTCATCGACGAAATGATACGAGCCTCATGCGAT CCTGGAGTAGCCGAGGTCCTAGAAAGTGTCTTCAGCTTCAACCTATCTCTACCTCTCAACTATCTCCTTGAAGGCTGTAAGGACCAGGTTCTTATCATAC AGGGAATGAAGGATCCAATCATGAACTCCAAGTCCAAAGTGGCTATGCTGAAGGAACATTGCCCTGAATTCGTGATCAAGCAATTGGACGCTGGACATTG TCCTCACGACGAGCTGCCTGACGAAGTGAACTCCATCATTTGCGAATGGACATCCATGATCGAGAGCCGAAACCTTGCTCCTAGCTTTTCGTAG
AA sequence Show only first row Show all	>Lus10031137 pacid=23151044 polypeptide=Lus10031137 locus=Lus10031137.g ID=Lus10031137.BGIv1.0 annot-version=v1.0 MAAALLSSSPRFLFLSPANIPPSFRRRSSYHCRRCSSISASTPGRRNVDLKTVAIVWFKQDLRVDDHPGIVDASGFEAVVPVYVFDHRILSRYSDEMLEL VLFALEDLKRSLIQLGSNLMIRFGDAESIIRSLALEVRSSNVIVEEEVEYHLIEMVEIMEKTLTEMPLSAGNSKIMRWRTPFYDFKNLTGLPANYEEFKK LKLPITSPVPQPPNLPGSEFELDWGTLPTMDQLKGYMDQNPSKLKETWSSVKQISTESILQKRNKVSKSGDSLNRSLMKRNKLKNTVFITEEQNFVGGGS SSVLNGLAAYLRYLEGTARDDWQEVHAKLRSAETRDGASFSAIFGPALSLGIISRRKVYMEAIRYDRERNGGFQSPFGYSTVTIAAAVNAVCSMEWYWLM ALKGQRNEEGLNSTRIWRWNGCLVQYAVAGQKGPPVLLVHGFGAFSEHYRDNVHQIAEGGNRVWAITLLGFGKSEKPSVVYTELLWAELLKDFIIEVVHE PVHLVGNSIGGYVASIATCFWPSLVRSIVLVNSAGNIVPGYRYLPFSKERRIAGAAWLGARAILLYLRSNIRSIVRNCYPTRPVRADDWLIDEMIRASCD PGVAEVLESVFSFNLSLPLNYLLEGCKDQVLIIQGMKDPIMNSKSKVAMLKEHCPEFVIKQLDAGHCPHDELPDEVNSIICEWTSMIESRNLAPSFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25290			DNA photolyases;DNA photolyase...		Lus10031137 [exp]	0	1
AT4G25290			DNA photolyases;DNA photolyase...		Lus10031716 [exp]	1.0	0.9330
AT3G23940			dehydratase family (.1.2)		Lus10032616 [exp]	5.5	0.8325
AT4G18810			NAD(P)-binding Rossmann-fold s...		Lus10029255 [exp]	5.8	0.9061
AT5G48330		RUG2	RCC1/UVR8/GEF-like 2, Regulato...		Lus10012298 [exp]	6.0	0.8791
AT4G18810			NAD(P)-binding Rossmann-fold s...		Lus10007308 [exp]	6.2	0.9040
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10043245 [exp]	6.9	0.8669
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10040868 [exp]	8.5	0.8724
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10021721 [exp]	9.2	0.8743
AT1G05100		MAPKKK18	mitogen-activated protein kina...		Lus10031544 [exp]	9.3	0.7886
AT5G24850		CRY3	cryptochrome 3 (.1)		Lus10020878 [exp]	9.5	0.8676

Compare expression of checked genes

Lus10031137 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.