Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62360 152 / 2e-46 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G25260 124 / 2e-35 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G62350 122 / 9e-35 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G62760 124 / 3e-34 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G47380 111 / 1e-30 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G62770 110 / 3e-30 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G14890 106 / 2e-28 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT2G01610 105 / 7e-28 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G25250 100 / 2e-26 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G12390 97 / 4e-25 PME1 pectin methylesterase inhibitor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031717 [exp] 254 / 9e-87 AT5G62360 179 / 3e-57 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10038915 [exp] 164 / 5e-51 AT5G62360 174 / 5e-55 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10027199 [exp] 160 / 1e-49 AT5G62360 169 / 3e-53 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10038914 [exp] 126 / 1e-36 AT5G62350 192 / 1e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10027198 [exp] 126 / 2e-36 AT5G62350 191 / 3e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031133 [exp] 125 / 5e-36 AT5G62350 211 / 8e-70 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031711 [exp] 125 / 9e-36 AT5G62360 145 / 4e-44 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10028910 [exp] 125 / 1e-35 AT1G62760 169 / 1e-51 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10004327 [exp] 119 / 2e-33 AT1G62760 164 / 8e-50 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G128100 [exp] 178 / 1e-56 AT5G62360 221 / 1e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128200 [exp] 172 / 3e-54 AT5G62360 172 / 1e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128300 [exp] 165 / 1e-51 AT5G62360 192 / 1e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.012G127500 [exp] 129 / 1e-37 AT5G62350 220 / 2e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128700 [exp] 126 / 3e-36 AT5G62350 221 / 7e-74 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.001G119300 [exp] 124 / 1e-35 AT1G62760 167 / 3e-51 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G113600 [exp] 124 / 1e-35 AT1G62760 171 / 1e-52 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G113700 [exp] 117 / 9e-33 AT4G12390 178 / 1e-56 pectin methylesterase inhibitor 1 (.1) Potri.010G109300 [exp] 117 / 1e-32 AT1G14890 218 / 5e-72 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128400 [exp] 111 / 2e-30 AT5G62360 134 / 2e-39 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10031138 pacid=23151092 polypeptide=Lus10031138 locus=Lus10031138.g ID=Lus10031138.BGIv1.0 annot-version=v1.0 ATGTCGGCGCCGACATCATCCTCCGCCTACGCTCTCCTCGCCGTCACTTTGTTACTAGCCTCCACGTCATCAGCCTCAAGACCCATTTCCTCCTCCTCCG CCGGCGCCACAAACACAGAGTTCATCCGTACGTCATGCACCGCCACGTCATACCCGAAGCTATGCTACACCTCCTTATCAACCCACGTTACCAAAATCCA GACTAGCCCCAAGCTCCTGGCCTCTGCCGCCCTTCATGTGGCGCTGTCATCGGCGAAGTCAGCTTTAACTGAGATGGCCGAGCACTCCCGAGGCCACCTG CATGGCCCTCGTGAGGTGGGGGCCATACAAGATTGCGTGGAGGAGCTTGGAGACTCTGTTGACCAAATTCACGAATCGGTCAACAAAATGGAGGGCAAGG GAAAAGATAGTGGTGAGGAGGGTGCGGATTTCGAGAGGATGATTAACGACGTGGAGACTTGGGTCAGCGCGGCGTTGACCGACCAGGGCACGTGCAGCGA CGGGTTCGGAGAGATGGACGGAGAGTTAAGAGAGGCTGTGAAAGGGAAGGTTGTTAGAGTTGCTAAGCTTACTAGTAATGCCTTGGATTTGATTAGCAAC TATGCTTCTCTACATTGA
AA sequence Show only first row Show all	>Lus10031138 pacid=23151092 polypeptide=Lus10031138 locus=Lus10031138.g ID=Lus10031138.BGIv1.0 annot-version=v1.0 MSAPTSSSAYALLAVTLLLASTSSASRPISSSSAGATNTEFIRTSCTATSYPKLCYTSLSTHVTKIQTSPKLLASAALHVALSSAKSALTEMAEHSRGHL HGPREVGAIQDCVEELGDSVDQIHESVNKMEGKGKDSGEEGADFERMINDVETWVSAALTDQGTCSDGFGEMDGELREAVKGKVVRVAKLTSNALDLISN YASLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62360			Plant invertase/pectin methyle...		Lus10031138 [exp]	0	1
AT1G60060			Serine/threonine-protein kinas...		Lus10018736 [exp]	1.4	0.9775
AT1G03220			Eukaryotic aspartyl protease f...		Lus10034035 [exp]	1.4	0.9754
AT5G54010			UDP-Glycosyltransferase superf...		Lus10013337 [exp]	2.4	0.9652
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10009799 [exp]	2.8	0.9648
AT4G00165			Bifunctional inhibitor/lipid-t...		Lus10015883 [exp]	3.2	0.9493
AT1G68260			Thioesterase superfamily prote...		Lus10031948 [exp]	3.5	0.9483
AT1G60060			Serine/threonine-protein kinas...		Lus10024800 [exp]	5.9	0.9482
AT2G27385			Pollen Ole e 1 allergen and ex...		Lus10004847 [exp]	6.2	0.9355
AT2G24800			Peroxidase superfamily protein...		Lus10020097 [exp]	8.1	0.9237
AT4G00165			Bifunctional inhibitor/lipid-t...		Lus10009282 [exp]	8.7	0.9195

Compare expression of checked genes

Lus10031138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.