Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70710 488 / 6e-170 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1) AT4G39010 472 / 2e-163 ATGH9B18 glycosyl hydrolase 9B18 (.1) AT1G23210 470 / 1e-162 ATGH9B6 glycosyl hydrolase 9B6 (.1) AT4G02290 465 / 2e-160 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT1G02800 461 / 5e-159 ATCEL2 cellulase 2 (.1) AT4G39000 447 / 8e-154 ATGH9B17 glycosyl hydrolase 9B17 (.1) AT1G71380 440 / 6e-151 ATCEL3 ,ATGH9B3 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) AT1G22880 438 / 3e-150 ATCEL5 ,ATGH9B4 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, ARABIDOPSIS THALIANA CELLULASE 5, cellulase 5 (.1.2) AT4G09740 410 / 3e-139 ATGH9B14 glycosyl hydrolase 9B14 (.1) AT4G23560 400 / 1e-135 ATGH9B15 glycosyl hydrolase 9B15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031718 [exp] 978 / 0 AT1G70710 498 / 7e-174 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10027205 [exp] 509 / 3e-178 AT1G70710 584 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10008208 [exp] 491 / 2e-170 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10027201 [exp] 489 / 1e-169 AT1G23210 560 / 0.0 glycosyl hydrolase 9B6 (.1) Lus10029071 [exp] 480 / 1e-166 AT1G70710 827 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10038223 [exp] 462 / 3e-159 AT4G02290 706 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10001666 [exp] 453 / 6e-156 AT1G02800 600 / 0.0 cellulase 2 (.1) Lus10042071 [exp] 446 / 4e-153 AT4G39010 717 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10018077 [exp] 446 / 5e-153 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G128000 [exp] 580 / 0 AT1G70710 569 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.015G127900 [exp] 503 / 2e-175 AT1G23210 568 / 0.0 glycosyl hydrolase 9B6 (.1) Potri.008G132700 [exp] 489 / 3e-170 AT1G70710 808 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.010G109200 [exp] 487 / 2e-169 AT1G70710 829 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.002G202400 [exp] 484 / 5e-168 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.014G126900 [exp] 474 / 5e-164 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.001G083200 [exp] 463 / 4e-160 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.019G069300 [exp] 461 / 2e-159 AT1G71380 762 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Potri.004G162200 [exp] 459 / 3e-158 AT4G39010 703 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.009G123900 [exp] 453 / 5e-156 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10031139 pacid=23150937 polypeptide=Lus10031139 locus=Lus10031139.g ID=Lus10031139.BGIv1.0 annot-version=v1.0 ATGGGTAGTTTCTTCTGCATCGCCGGAATCCTGTCAGCTTTTACTCTGTTCGCCGGAATATCAACCGTTTCCGCCGAACCCCGCCTCCATTATGCTTCCC CGTCGCATGACTACGGCGACGCTTTGACCAAGTCCATCATGTTCTTCGAAGGTCAACGCTCCGGTAAGCTCCCTTCCAGTCAGAGACTCACTTGGAGGAA AGACTCTGCTCTCAGAGACGGCTCCGATATCGGGATGGATATGGTGGGAGGGTACTACGATGCAGGGGACAACGTCAAATTCCATCTCCCGATGGCGTAT TCGACGACAATGTTGGCATGGAGCATAGTTGCACACGGTAACAACATGGGTTACAAAGACCTGAAGAAGGCACTCGAGGCGTTACGGTGGGGGACTGACT ATTTCCTCAAGGCCACGAGTGTACACGGTCGGATTGTGGCTCAGGTAGGCGACCCAGTCTTGGACCATGACTGTTGGGAGAGACCGGAAGACATGGACAC TCCTAGGACCACTTATGTCCTCAATCAGACCCACCCTGGCTCGGAAGTCGCGGGGGAGATCACGGCCGCTCTCGCTGCTGGATCGATCGCGTTCAAGTTG GTCGACGTTAAGTACTCCAAAGTGCTCCTCGACAGGGCTTTGCAGGCGTTTGAATTCGCCGAGAAATACCGTGGGTCATACGCGAATAGCGTCGCAGCGG GTGCCTGTCCATTCTACTGCAGCCCGAACGGATTCATGGATGAATTGGTTTGGGGAGCGGCGTGGCTGTTTCAAGCAACTGGGAGTGCATCCTTTCTACA GTTTGCTAAATCCAACTTAGGAACCGGCCATTGCGCGTTCAACTGGGACTCGAAATTTCCTGGCGTTTACGTCCTGCTTTCTGAGTGGGATAACGATTTC GCAACCAATGCTGATAATCTAGTTTGCGAAATACTGCCCGAATGTCCGACCAAGGCATACACTTTCACTCCAGGCGGGCTGTTATATTCAAAAGGAGCAC CTAGCAACCTGCAAAACCCAACAGCTCTGGGCTTCCTTCTGTCAGTTTACTCAAAGATCCTGAAAGCCCAAAACGGAGCTGTAAATTGCGGGAACAATGT CCGAATTGACTCATACAGACTCCTACAATTCGTCAAGAGTCAGGCAGATTACATCCTAGGAAGTAACCCGTTGGGGATGTCGTACATGGTCGGGTACGGA CCCAAATACCCGAAAAGGATTCACCATAGAGGCTCTATACTGCCTAGCATGGACAAGCATCCGAGTCGAATCCAGTGTTCAGAGGGCTACTCGTACTTCA AGGTCGTGAAGACCAACCCGAATGTGTTGATAGGGGCGGTACCGGGTGGGCCCGACATGAACGACGGGTTTGAGGATAGTCAGTTAGTTGTCTCTCAATC GGAGCCTGCCACGTATATCAATGCGCCCTTCGTCGGAGTTCTGGCCTTCTTGAAAGGGGGGCAGTGGGTTGAGTTCTACAAAAGTTATTTTCATTGGTAA
AA sequence Show only first row Show all	>Lus10031139 pacid=23150937 polypeptide=Lus10031139 locus=Lus10031139.g ID=Lus10031139.BGIv1.0 annot-version=v1.0 MGSFFCIAGILSAFTLFAGISTVSAEPRLHYASPSHDYGDALTKSIMFFEGQRSGKLPSSQRLTWRKDSALRDGSDIGMDMVGGYYDAGDNVKFHLPMAY STTMLAWSIVAHGNNMGYKDLKKALEALRWGTDYFLKATSVHGRIVAQVGDPVLDHDCWERPEDMDTPRTTYVLNQTHPGSEVAGEITAALAAGSIAFKL VDVKYSKVLLDRALQAFEFAEKYRGSYANSVAAGACPFYCSPNGFMDELVWGAAWLFQATGSASFLQFAKSNLGTGHCAFNWDSKFPGVYVLLSEWDNDF ATNADNLVCEILPECPTKAYTFTPGGLLYSKGAPSNLQNPTALGFLLSVYSKILKAQNGAVNCGNNVRIDSYRLLQFVKSQADYILGSNPLGMSYMVGYG PKYPKRIHHRGSILPSMDKHPSRIQCSEGYSYFKVVKTNPNVLIGAVPGGPDMNDGFEDSQLVVSQSEPATYINAPFVGVLAFLKGGQWVEFYKSYFHW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Lus10031139 [exp]	0	1
AT3G51560			Disease resistance protein (TI...		Lus10029858 [exp]	3.5	0.9663
					Lus10027601 [exp]	4.1	0.7656
					Lus10014737 [exp]	5.1	0.9058
AT2G26850			F-box family protein (.1)		Lus10036444 [exp]	5.5	0.8114
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10028049 [exp]	6.2	0.9058
AT3G04060	NAC	ANAC046	NAC domain containing protein ...		Lus10033699 [exp]	7.2	0.9058
					Lus10019558 [exp]	8.1	0.9058
AT4G16195			Plant self-incompatibility pro...		Lus10019768 [exp]	8.8	0.9058
					Lus10021773 [exp]	9.5	0.9058
					Lus10002267 [exp]	10.2	0.7211

Compare expression of checked genes

Lus10031139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.